Discrimination of marine phytoplankton species through the statistical analysis of their flow cytometric signatures

被引:29
作者
Carr, MR
Tarran, GA
Burkill, PH
机构
[1] Plymouth Marine Laboratory, West Hoe, Plymouth PL1 3DH, Prospect Place
关键词
D O I
10.1093/plankt/18.7.1225
中图分类号
Q17 [水生生物学];
学科分类号
071004 ;
摘要
Flow cytometry is a research technique for the rapid analysis of phytoplankton abundance and distribution in marine waters. Although the technique is inherently much faster than optical microscopy for counting phytoplankton, its capability for analysing individual taxa is restricted, due largely to the lack of suitable data analysis protocols. These protocols. which use univariate and bivariate plots, can typically differentiate a maximum of three or four phytoplankton taxa under laboratory conditions. We present here two multivariate statistical techniques, quadratic discriminant analysis (QDA) and canonical variate analysis (CVA), used to identify 32 species of phytoplankton from how cytometric data. CVA was shown to be a useful graphical technique for analysing and displaying data, while QDA was successful at discriminating over two-thirds of the phytoplankton species, with classification rates >70%. QDA was also shown to be more than Two orders of magnitude faster than conventional flow cytometric analyses for discriminating and enumerating phytoplankton species. We discuss the potential of multivariate analysis, and ways of developing these techniques for the detailed analysis of complex natural phytoplankton populations in the marine environment.
引用
收藏
页码:1225 / 1238
页数:14
相关论文
共 15 条
[1]   AUTOMATIC IDENTIFICATION OF ALGAE - NEURAL NETWORK ANALYSIS OF FLOW CYTOMETRIC DATA [J].
BALFOORT, HW ;
SNOEK, J ;
SMITS, JRM ;
BREEDVELD, LW ;
HOFSTRAAT, JW ;
RINGELBERG, J .
JOURNAL OF PLANKTON RESEARCH, 1992, 14 (04) :575-589
[2]   NEURAL-NETWORK ANALYSIS OF FLOW CYTOMETRIC DATA FOR 40 MARINE-PHYTOPLANKTON SPECIES [J].
BODDY, L ;
MORRIS, CW ;
WILKINS, MF ;
TARRAN, GA ;
BURKILL, PH .
CYTOMETRY, 1994, 15 (04) :283-293
[3]   A NOVEL FREE-LIVING PROCHLOROPHYTE ABUNDANT IN THE OCEANIC EUPHOTIC ZONE [J].
CHISHOLM, SW ;
OLSON, RJ ;
ZETTLER, ER ;
GOERICKE, R ;
WATERBURY, JB ;
WELSCHMEYER, NA .
NATURE, 1988, 334 (6180) :340-343
[4]  
COLEBROOK J. M., 1960, BULL MARINE ECOL, V5, P51
[5]   FLUORESCENCE PULSE SHAPE AS A MORPHOLOGICAL INDICATOR IN THE ANALYSIS OF COLONIAL MICROALGAE BY FLOW-CYTOMETRY [J].
CUNNINGHAM, A .
JOURNAL OF MICROBIOLOGICAL METHODS, 1990, 11 (01) :27-36
[6]   ANALYZING MULTIVARIATE FLOW CYTOMETRIC DATA IN AQUATIC SCIENCES [J].
DEMERS, S ;
KIM, J ;
LEGENDRE, P ;
LEGENDRE, L .
CYTOMETRY, 1992, 13 (03) :291-298
[7]   APPLICATION OF ARTIFICIAL NEURAL NETWORKS TO CHROMOSOME CLASSIFICATION [J].
ERRINGTON, PA ;
GRAHAM, J .
CYTOMETRY, 1993, 14 (06) :627-639
[8]   USE OF A NEURAL NET COMPUTER-SYSTEM FOR ANALYSIS OF FLOW CYTOMETRIC DATA OF PHYTOPLANKTON POPULATIONS [J].
FRANKEL, DS ;
OLSON, RJ ;
FRANKEL, SL ;
CHISHOLM, SW .
CYTOMETRY, 1989, 10 (05) :540-550
[9]  
Guillard R. R. L., 1975, CULTURE MARINE INVER, P29, DOI [10.1007/978-1-4615-8714-9_3, DOI 10.1007/978-1-4615-8714-9_3]