Evaluation of removable statistical interaction for binary traits

被引:18
作者
Satagopan, Jaya M. [1 ]
Elston, Robert C. [2 ]
机构
[1] Mem Sloan Kettering Canc Ctr, Dept Epidemiol & Biostat, New York, NY 10065 USA
[2] Case Western Reserve Univ, Dept Epidemiol & Biostat, Cleveland, OH 44106 USA
基金
新加坡国家研究基金会;
关键词
analysis of variance; curvature; independence; interaction effect; link function; main effect; residuals; score statistic; Tukey's test; transformation; unbalanced data; GENE-GENE INTERACTIONS; GENOME-WIDE ASSOCIATION; ENVIRONMENT INTERACTIONS; HUMAN-DISEASES; SUSCEPTIBILITY; REGRESSION; EPISTASIS; MODELS; CANCER; TRANSFORMATIONS;
D O I
10.1002/sim.5628
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
This paper is concerned with evaluating whether an interaction between two sets of risk factors for a binary trait is removable and, when it is removable, fitting a parsimonious additive model using a suitable link function to estimate the disease odds (on the natural logarithm scale). Statisticians define the term interaction' as a departure from additivity in a linear model on a specific scale on which the data are measured. Certain interactions may be eliminated via a transformation of the outcome such that the relationship between the risk factors and the outcome is additive on the transformed scale. Such interactions are known as removable interactions. We develop a novel test statistic for detecting the presence of a removable interaction in casecontrol studies. We consider the Guerrero and Johnson family of transformations and show that this family constitutes an appropriate link function for fitting an additive model when an interaction is removable. We use simulation studies to examine the type I error and power of the proposed test and to show that, when an interaction is removable, an additive model based on the Guerrero and Johnson link function leads to more precise estimates of the disease odds parameters and a better fit. We illustrate the proposed test and use of the transformation by using casecontrol data from three published studies. Finally, we indicate how one can check that, after transformation, no further interaction is significant. Copyright (c) 2012 John Wiley & Sons, Ltd.
引用
收藏
页码:1164 / 1190
页数:27
相关论文
共 47 条
[1]  
Agresti A, 2013, Categorical data analysis, V3rd
[2]  
[Anonymous], 1999, The analysis of variance
[3]  
[Anonymous], 1980, J ROYAL STAT SOC SER, DOI DOI 10.2307/2346405
[4]  
ARANDAORDAZ FJ, 1981, BIOMETRIKA, V68, P357, DOI 10.1093/biomet/68.2.357
[5]  
Box G.E. P., 2006, Improving almost anything
[6]   AN ANALYSIS OF TRANSFORMATIONS [J].
BOX, GEP ;
COX, DR .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1964, 26 (02) :211-252
[7]   Prioritizing GWAS Results: A Review of Statistical Methods and Recommendations for Their Application [J].
Cantor, Rita M. ;
Lange, Kenneth ;
Sinsheimer, Janet S. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2010, 86 (01) :6-22
[8]   Powerful multilocus tests of genetic association in the presence of gene-gene and gene-environment interactions [J].
Chatterjee, Nilanjan ;
Kalaylioglu, Zeynep ;
Moslehi, Roxana ;
Peters, Ulrike ;
Wacholder, Sholom .
AMERICAN JOURNAL OF HUMAN GENETICS, 2006, 79 (06) :1002-1016
[9]   Using Biological Knowledge to Discover Higher Order Interactions in Genetic Association Studies [J].
Chen, Gary K. ;
Thomas, Duncan C. ;
Presson, Angela P. .
GENETIC EPIDEMIOLOGY, 2010, 34 (08) :931-931
[10]   Detecting gene-gene interactions that underlie human diseases [J].
Cordell, Heather J. .
NATURE REVIEWS GENETICS, 2009, 10 (06) :392-404