Major submissions tool developments at the European nucleotide archive

被引:18
作者
Amid, Clara [1 ]
Birney, Ewan [1 ]
Bower, Lawrence [1 ]
Cerdeno-Tarraga, Ana [1 ]
Cheng, Ying [1 ]
Cleland, Iain [1 ]
Faruque, Nadeem [1 ]
Gibson, Richard [1 ]
Goodgame, Neil [1 ]
Hunter, Christopher [1 ]
Jang, Mikyung [1 ]
Leinonen, Rasko [1 ]
Liu, Xin [1 ]
Oisel, Arnaud [1 ]
Pakseresht, Nima [1 ]
Plaister, Sheila [1 ]
Radhakrishnan, Rajesh [1 ]
Reddy, Kethi [1 ]
Riviere, Stephane [1 ]
Rossello, Marc [1 ]
Senf, Alexander [1 ]
Smirnov, Dimitriy [1 ]
Ten Hoopen, Petra [1 ]
Vaughan, Daniel [1 ]
Vaughan, Robert [1 ]
Zalunin, Vadim [1 ]
Cochrane, Guy [1 ]
机构
[1] Wellcome Trust Genome Campus, European Bioinformat Inst, Cambridge CB10 1SD, England
基金
英国惠康基金; 英国生物技术与生命科学研究理事会;
关键词
D O I
10.1093/nar/gkr946
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena), Europe's primary nucleotide sequence resource, captures and presents globally comprehensive nucleic acid sequence and associated information. Covering the spectrum from raw data to assembled and functionally annotated genomes, the ENA has witnessed a dramatic growth resulting from advances in sequencing technology and ever broadening application of the methodology. During 2011, we have continued to operate and extend the broad range of ENA services. In particular, we have released major new functionality in our interactive web submission system, Webin, through developments in template-based submissions for annotated sequences and support for raw next-generation sequence read submissions.
引用
收藏
页码:D43 / D47
页数:5
相关论文
共 12 条
  • [1] GenBank
    Benson, Dennis A.
    Karsch-Mizrachi, Ilene
    Lipman, David J.
    Ostell, James
    Sayers, Eric W.
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D32 - D37
  • [2] Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database
    Blavet, Nicolas
    Charif, Delphine
    Oger-Desfeux, Christine
    Marais, Gabriel A. B.
    Widmer, Alex
    [J]. BMC GENOMICS, 2011, 12
  • [3] The International Nucleotide Sequence Database Collaboration
    Cochrane, Guy
    Karsch-Mizrachi, Ilene
    Nakamura, Yasukazu
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D15 - D18
  • [4] c-di-AMP Is a New Second Messenger in Staphylococcus aureus with a Role in Controlling Cell Size and Envelope Stress
    Corrigan, Rebecca M.
    Abbott, James C.
    Burhenne, Heike
    Kaever, Volkhard
    Gruendling, Angelika
    [J]. PLOS PATHOGENS, 2011, 7 (09)
  • [5] Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
    Ficz, Gabriella
    Branco, Miguel R.
    Seisenberger, Stefanie
    Santos, Fatima
    Krueger, Felix
    Hore, Timothy A.
    Marques, C. Joana
    Andrews, Simon
    Reik, Wolf
    [J]. NATURE, 2011, 473 (7347) : 398 - U589
  • [6] Efficient storage of high throughput DNA sequencing data using reference-based compression
    Fritz, Markus Hsi-Yang
    Leinonen, Rasko
    Cochrane, Guy
    Birney, Ewan
    [J]. GENOME RESEARCH, 2011, 21 (05) : 734 - 740
  • [7] Multiple reference genomes and transcriptomes for Arabidopsis thaliana
    Gan, Xiangchao
    Stegle, Oliver
    Behr, Jonas
    Steffen, Joshua G.
    Drewe, Philipp
    Hildebrand, Katie L.
    Lyngsoe, Rune
    Schultheiss, Sebastian J.
    Osborne, Edward J.
    Sreedharan, Vipin T.
    Kahles, Andre
    Bohnert, Regina
    Jean, Geraldine
    Derwent, Paul
    Kersey, Paul
    Belfield, Eric J.
    Harberd, Nicholas P.
    Kemen, Eric
    Toomajian, Christopher
    Kover, Paula X.
    Clark, Richard M.
    Raetsch, Gunnar
    Mott, Richard
    [J]. NATURE, 2011, 477 (7365) : 419 - 423
  • [8] DDBJ progress report
    Kaminuma, Eli
    Kosuge, Takehide
    Kodama, Yuichi
    Aono, Hideo
    Mashima, Jun
    Gojobori, Takashi
    Sugawara, Hideaki
    Ogasawara, Osamu
    Takagi, Toshihisa
    Okubo, Kousaku
    Nakamura, Yasukazu
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D22 - D27
  • [9] The Sequence Read Archive
    Leinonen, Rasko
    Sugawara, Hideaki
    Shumway, Martin
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D19 - D21
  • [10] Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death
    Schuenemann, Verena J.
    Bos, Kirsten
    DeWitte, Sharon
    Schmedes, Sarah
    Jamieson, Joslyn
    Mittnik, Alissa
    Forrest, Stephen
    Coombes, Brian K.
    Wood, James W.
    Earn, David J. D.
    White, William
    Krause, Johannes
    Poinar, Hendrik N.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (38) : E746 - E752