Development of an empirical force field for silica. Application to the quartz-water interface

被引:217
作者
Lopes, PEM
Murashov, V
Tazi, M
Demchuk, E
MacKerell, AD [1 ]
机构
[1] Univ Maryland, Sch Pharm, Dept Pharmaceut Sci, Baltimore, MD 21201 USA
[2] NIOSH, Morgantown, WV 26505 USA
[3] CDC, Div Toxicol & Environm Med, Agcy Tox Subst & Dis Registry, Atlanta, GA 30333 USA
[4] W Virginia Univ, Sch Pharm, Morgantown, WV 26506 USA
关键词
D O I
10.1021/jp055341j
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Interactions of pulverized crystalline silica with biological systems, including the lungs, cause cell damage, inflammation, and apoptosis. To allow computational atomistic modeling of these pathogenic processes, including interactions between silica surfaces and biological molecules, new parameters for quartz, compatible with the CHARMM empirical force field were developed. Parameters were optimized to reproduce the experimental geometry of cc-quartz, ab initio vibrational spectra, and interactions between model compounds and water. The newly developed force field was used to study interactions of water with two singular surfaces of cc-quartz, (011) and (100). Properties monitored and analyzed include the variation of the density of water molecules in the plane perpendicular to the surface, disruption of the water H-bond network upon adsorption, and space-time correlations of water oxygen atoms in terms of Van Hove self-correlation functions. The vibrational density of states spectra of water in confined compartments were also computed and compared with experimental neutron-scattering results. Both the attenuation and shifting to higher frequencies of the hindered translational peaks upon confinement are clearly reproduced by the model. However, an upshift of librational peaks under the conditions of model confinement still remains underrepresented at the current empirical level.
引用
收藏
页码:2782 / 2792
页数:11
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