Unraveling DNA helicases - Motif, structure, mechanism and function

被引:138
作者
Tuteja, N [1 ]
Tuteja, R [1 ]
机构
[1] Int Ctr Genet Engn & Biotechnol, New Delhi 110067, India
来源
EUROPEAN JOURNAL OF BIOCHEMISTRY | 2004年 / 271卷 / 10期
关键词
crystal structure; DEAD-box protein; DNA helicase; helicase motifs; unwinding enzyme;
D O I
10.1111/j.1432-1033.2004.04094.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DNA helicases are molecular 'motor' enzymes that use the energy of NTP hydrolysis to separate transiently energetically stable duplex DNA into single strands. They are therefore essential in nearly all DNA metabolic transactions. They act as essential molecular tools for the cellular machinery. Since the discovery of the first DNA helicase in Escherichia coli in 1976, several have been isolated from both prokaryotic and eukaryotic systems. DNA helicases generally bind to ssDNA or ssDNA/dsDNA junctions and translocate mainly unidirectionally along the bound strand and disrupt the hydrogen bonds between the duplexes. Most helicases contain conserved motifs which act as an engine to drive DNA unwinding. Crystal structures have revealed an underlying common structural fold for their function. These structures suggest the role of the helicase motifs in catalytic function and offer clues as to how these proteins can translocate and unwind DNA. The genes containing helicase motifs may have evolved from a common ancestor. In this review we cover the conserved motifs, structural information, mechanism of DNA unwinding and translocation, and functional aspects of DNA helicases.
引用
收藏
页码:1849 / 1863
页数:15
相关论文
共 114 条
[1]   Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase [J].
Ali, JA ;
Lohman, TM .
SCIENCE, 1997, 275 (5298) :377-380
[2]  
ARAI N, 1981, J BIOL CHEM, V256, P5294
[3]   Crystal structure of the Holliday junction DNA in complex with a single RuvA tetramer [J].
Ariyoshi, M ;
Nishino, T ;
Iwasaki, H ;
Shinagawa, H ;
Morikawa, K .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (15) :8257-8262
[4]   The DEAD box RNA helicase family in Arabidopsis thaliana [J].
Aubourg, S ;
Kreis, M ;
Lecharny, A .
NUCLEIC ACIDS RESEARCH, 1999, 27 (02) :628-636
[5]   Bacillus subtilis bacteriophage SPP1 hexameric DNA helciase, G40P, interacts with forked DNA [J].
Ayora, S ;
Weise, F ;
Mesa, P ;
Stasiak, A ;
Alonso, JC .
NUCLEIC ACIDS RESEARCH, 2002, 30 (11) :2280-2289
[6]   High-resolution structure of the E.coli RecQ helicase catalytic core [J].
Bernstein, DA ;
Zittel, MC ;
Keck, JL .
EMBO JOURNAL, 2003, 22 (19) :4910-4921
[7]   Translocation step size and mechanism of theRecBC DNA helicase [J].
Bianco, PR ;
Kowalczykowski, SC .
NATURE, 2000, 405 (6784) :368-372
[8]   Structural and functional characterization of the human DNA repair helicase XPD by comparative molecular modeling and site-directed mutagenesis of the bacterial repair protein UvrB [J].
Bienstock, RJ ;
Skorvaga, M ;
Mandavilli, BS ;
Van Houten, B .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (07) :5309-5316
[9]  
BOEHMER PE, 1993, J BIOL CHEM, V268, P1220
[10]   A YEAST GENE REQUIRED FOR DNA-REPLICATION ENCODES A PROTEIN WITH HOMOLOGY TO DNA HELICASES [J].
BUDD, ME ;
CAMPBELL, JL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (17) :7642-7646