Fly-TILL Reverse genetics using a living point mutation resource

被引:22
作者
Cooper, Jennifer L. [1 ,2 ]
Till, Bradley J. [3 ]
Henikoff, Steven [1 ,2 ]
机构
[1] Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
[2] Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA
[3] IAEA, FAO, Agr & Biotechnol Lab, Seibersdorf, Austria
关键词
Drosophila melanogaster; ethylmethanesulfonate; TILLING; balancer chromosomes; mutational spectrum;
D O I
10.4161/fly.7366
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
Mutagenesis with ethylmethanesulfonate (EMS) has been the standard for traditional genetic screens, and in recent years has been applied to reverse genetics. However, reverse-genetic strategies require maintaining a viable germline library so that mutations that are discovered can subsequently be recovered. In applying our TILLING (Targeting Induced Local Lesions IN Genomes) method to establish a Drosophila reverse-genetic service (Fly-TILL), we chose to screen the Zuker lines, a large collection of EMS-mutagenized second-and third-chromosome balanced lines that had been established for forward-genetic screening. For the past four years, our Fly-TILL service has screened this collection to provide similar to 150 allelic series of point mutations for the fly community. Our analysis of > 2000 point mutations and indels have provided a glimpse into the population dynamics of this valuable genetic resource. We found evidence for selection and differential recovery of mutations, depending on distance from balancer breakpoints. Although this process led to variable mutational densities, we have nevertheless been able to deliver potentially valuable mutations in genes selected by Fly-TILL users. We anticipate that our findings will help guide the future implementation of point-mutation resources for the Drosophila community.
引用
收藏
页码:300 / 302
页数:3
相关论文
共 17 条
[1]
Bentley A, 2000, GENETICS, V156, P1169
[2]
High-throughput screening for induced point mutations [J].
Colbert, T ;
Till, BJ ;
Tompa, R ;
Reynolds, S ;
Steine, MN ;
Yeung, AT ;
McCallum, CM ;
Comai, L ;
Henikoff, S .
PLANT PHYSIOLOGY, 2001, 126 (02) :480-484
[3]
Retention of induced mutations in a Drosophila reverse-genetic resource [J].
Cooper, Jennifer L. ;
Greene, Elizabeth A. ;
Till, Bradley J. ;
Codomo, Christine A. ;
Wakimoto, Barbara T. ;
Henikoff, Steven .
GENETICS, 2008, 180 (01) :661-667
[4]
TILLING to detect induced mutations in soybean [J].
Cooper, Jennifer L. ;
Till, Bradley J. ;
Laport, Robert G. ;
Darlow, Margaret C. ;
Kleffner, Justin M. ;
Jamai, Aziz ;
El-Mellouki, Tarik ;
Liu, Shiming ;
Ritchie, Rae ;
Nielsen, Niels ;
Bilyeu, Kristin D. ;
Meksem, Khalid ;
Comai, Luca ;
Henikoff, Steven .
BMC PLANT BIOLOGY, 2008, 8 (1)
[5]
TILLING is an effective reverse genetics technique for Caenorhabditis elegans [J].
Gilchrist, Erin J. ;
O'Neil, Nigel J. ;
Rose, Ann M. ;
Zetka, Monique C. ;
Haughn, George W. .
BMC GENOMICS, 2006, 7 (1)
[6]
Greene EA, 2003, GENETICS, V164, P731
[7]
The Zuker collection:: A resource for the analysis of autosomal gene function in Drosophila melanogaster [J].
Koundakjian, EJ ;
Cowan, DM ;
Hardy, RW ;
Becker, AH .
GENETICS, 2004, 167 (01) :203-206
[8]
Targeting induced local lesions in genomes (TILLING) for plant functional genomics [J].
McCallum, CM ;
Comai, L ;
Greene, EA ;
Henikoff, S .
PLANT PHYSIOLOGY, 2000, 123 (02) :439-442
[9]
Targeted screening for induced mutations [J].
McCallum, CM ;
Comai, L ;
Greene, EA ;
Henikoff, S .
NATURE BIOTECHNOLOGY, 2000, 18 (04) :455-457
[10]
SIFT: predicting amino acid changes that affect protein function [J].
Ng, PC ;
Henikoff, S .
NUCLEIC ACIDS RESEARCH, 2003, 31 (13) :3812-3814