Molecular Dynamics Simulation of the Arginine-Assisted Solubilization of Caffeic Acid: Intervention in the Interaction

被引:38
作者
Hirano, Atsushi [1 ]
Kameda, Tomoshi [2 ]
Shinozaki, Daisuke [3 ]
Arakawa, Tsutomu [4 ]
Shiraki, Kentaro [3 ]
机构
[1] Natl Inst Adv Ind Sci & Technol, Nanosyst Res Inst Natl, Tsukuba, Ibaraki 3058562, Japan
[2] AIST, CBRC, Koto Ku, Tokyo 1350064, Japan
[3] Univ Tsukuba, Inst Appl Phys, Tsukuba, Ibaraki 3058573, Japan
[4] Alliance Prot Labs, San Diego, CA 92121 USA
关键词
HYDROXYPROPYL-BETA-CYCLODEXTRIN; WALLED CARBON NANOTUBES; PROTEIN AGGREGATION; AMINO-ACIDS; GUANIDINE-HYDROCHLORIDE; UMBRELLA INTEGRATION; ENERGY LANDSCAPE; SUPPRESSION; WATER; PURIFICATION;
D O I
10.1021/jp401609p
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We have previously demonstrated that arginine increases the solubility of aromatic compounds that have poor water solubility, an effect referred to as the "arginine-assisted solubilization system (AASS)". In the current study, we utilized a molecular dynamics simulation to examine the solubilization effects, of arginine on caffeic acid, which has a tendency to aggregate in aqueous solution. Caffeic acid has a hydrophobic moiety containing a pi-conjugated system that includes an aromatic ring and a hydrophilic moiety with hydroxyl groups and a carboxyl group. While its solubility increases at higher pH values due to the acquisition of a negative charge, the solubility was greatly enhanced by the addition of 1 M arginine hydrochloride at any pH. The results of the simulation indicated that at the caffeic acid aggregates were dissociated by the arginine hydrochloride, which is consistent with the experimental data. The binding free energy calculation for two caffeic acid molecules in an aqueous 1 M arginine hydrochloride solution e indicated that arginine stabilized the dissociated state due to interaction between its guanidinium group and the pi-conjugated system of the caffeic acid. The binding free energy of two caffeic acid molecules in the arginine hydrochloride solution exhibited a local minimum at approximately 8 angstrom, at which the arginine intervened between the caffeic acid molecules, causing a stabilization of the dissociated state of caffeic acid. Such stabilization by arginine likely led to the caffeic acid solubilization, as observed both the experiment and the MD simulation. The results reported in this paper suggest that AASS can be attributed to the stabilization resulting from the intervention of arginine in the interaction between the aromatic compounds.
引用
收藏
页码:7518 / 7527
页数:10
相关论文
共 52 条
[1]   Solubility enhancement of gluten and organic compounds by arginine [J].
Arakawa, Tsutomu ;
Kita, Yoshiko ;
Koyama, A. Hajime .
INTERNATIONAL JOURNAL OF PHARMACEUTICS, 2008, 355 (1-2) :220-223
[2]   Suppression of protein interactions by arginine: A proposed mechanism of the arginine effects [J].
Arakawa, Tsutomu ;
Ejima, Daisuke ;
Tsumoto, Kouhei ;
Obeyama, Noriyuki ;
Tanaka, Yoshikazu ;
Kita, Yoshiko ;
Timasheff, Serge N. .
BIOPHYSICAL CHEMISTRY, 2007, 127 (1-2) :1-8
[3]   Modulation of small molecule solubility and protein binding by arginine [J].
Arakawa, Tsutomu ;
Uozaki, Misao ;
Koyama, A. Hajime .
MOLECULAR MEDICINE REPORTS, 2010, 3 (05) :833-836
[4]   Arginine increases the solubility of alkyl gallates through interaction with the aromatic ring [J].
Ariki, Ryosuke ;
Hirano, Atsushi ;
Arakawa, Tsutomu ;
Shiraki, Kentaro .
JOURNAL OF BIOCHEMISTRY, 2011, 149 (04) :389-394
[5]   Structure, function, and stability of enzymes covalently attached to single-walled carbon nanotubes [J].
Asuri, Prashanth ;
Bale, Shyam Sundhar ;
Pangule, Ravindra C. ;
Shah, Dhiral A. ;
Kane, Ravi S. ;
Dordick, Jonathan S. .
LANGMUIR, 2007, 23 (24) :12318-12321
[6]   A WELL-BEHAVED ELECTROSTATIC POTENTIAL BASED METHOD USING CHARGE RESTRAINTS FOR DERIVING ATOMIC CHARGES - THE RESP MODEL [J].
BAYLY, CI ;
CIEPLAK, P ;
CORNELL, WD ;
KOLLMAN, PA .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (40) :10269-10280
[7]   Rational design of solution additives for the prevention of protein aggregation [J].
Baynes, BM ;
Trout, BL .
BIOPHYSICAL JOURNAL, 2004, 87 (03) :1631-1639
[8]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[9]   Interactions between single-walled carbon nanotubes and lysozyme [J].
Bomboi, F. ;
Bonincontro, A. ;
La Mesa, C. ;
Tardani, F. .
JOURNAL OF COLLOID AND INTERFACE SCIENCE, 2011, 355 (02) :342-347
[10]   Probing the Structure of Lysozyme-Carbon-Nanotube Hybrids with Molecular Dynamics [J].
Calvaresi, Matteo ;
Hoefinger, Siegfried ;
Zerbetto, Francesco .
CHEMISTRY-A EUROPEAN JOURNAL, 2012, 18 (14) :4308-4313