Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci

被引:384
作者
Cooper, Jason D. [1 ]
Smyth, Deborah J. [1 ]
Smiles, Adam M. [2 ]
Plagnol, Vincent [1 ]
Walker, Neil M. [1 ]
Allen, James E. [1 ]
Downes, Kate [1 ]
Barrett, Jeffrey C. [1 ]
Healy, Barry C. [1 ]
Mychaleckyj, Josyf C. [3 ]
Warram, James H. [2 ]
Todd, John A. [1 ]
机构
[1] Univ Cambridge, Addenbrookes Hosp, Juvenile Diabet Res Fdn,Cambridge Inst Med Res, Wellcome Trust Diabet & Inflammat Lab,Dept Med Ge, Cambridge CB2 0XY, England
[2] Joslin Diabet Ctr, Div Res, Boston, MA 02215 USA
[3] Univ Virginia, Ctr Publ Hlth Genom, Charlottesville, VA 22908 USA
基金
英国惠康基金; 英国医学研究理事会;
关键词
D O I
10.1038/ng.249
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We carried out a meta-analysis of data from three genome-wide association (GWA) studies of type 1 diabetes (T1D), testing 305,090 SNPs in 3,561 T1D cases and 4,646 controls of European ancestry. We obtained further support for 4q27 (IL2-IL21, P = 1.9 x 10(-8)) and, after genotyping an additional 6,225 cases, 6,946 controls and 2,828 families, convincing evidence for four previously unknown and distinct risk loci in chromosome regions 6q15 (BACH2, P = 4.7 x 10(-12)), 10p15 (PRKCQ, P = 3.7 x 10(-9)), 15q24 (CTSH, P = 3.2 x 10(-15)) and 22q13 (C1QTNF6, P = 2.0 x 10(-8)).
引用
收藏
页码:1399 / 1401
页数:3
相关论文
共 15 条
  • [1] Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    Burton, Paul R.
    Clayton, David G.
    Cardon, Lon R.
    Craddock, Nick
    Deloukas, Panos
    Duncanson, Audrey
    Kwiatkowski, Dominic P.
    McCarthy, Mark I.
    Ouwehand, Willem H.
    Samani, Nilesh J.
    Todd, John A.
    Donnelly, Peter
    Barrett, Jeffrey C.
    Davison, Dan
    Easton, Doug
    Evans, David
    Leung, Hin-Tak
    Marchini, Jonathan L.
    Morris, Andrew P.
    Spencer, Chris C. A.
    Tobin, Martin D.
    Attwood, Antony P.
    Boorman, James P.
    Cant, Barbara
    Everson, Ursula
    Hussey, Judith M.
    Jolley, Jennifer D.
    Knight, Alexandra S.
    Koch, Kerstin
    Meech, Elizabeth
    Nutland, Sarah
    Prowse, Christopher V.
    Stevens, Helen E.
    Taylor, Niall C.
    Walters, Graham R.
    Walker, Neil M.
    Watkins, Nicholas A.
    Winzer, Thilo
    Jones, Richard W.
    McArdle, Wendy L.
    Ring, Susan M.
    Strachan, David P.
    Pembrey, Marcus
    Breen, Gerome
    St Clair, David
    Caesar, Sian
    Gordon-Smith, Katherine
    Jones, Lisa
    Fraser, Christine
    Green, Elain K.
    [J]. NATURE, 2007, 447 (7145) : 661 - 678
  • [2] Chaudhary D, 2006, CURR OPIN INVEST DR, V7, P432
  • [3] Population structure, differential bias and genomic control in a large-scale, case-control association study
    Clayton, DG
    Walker, NM
    Smyth, DJ
    Pask, R
    Cooper, JD
    Maier, LM
    Smink, LJ
    Lam, AC
    Ovington, NR
    Stevens, HE
    Nutland, S
    Howson, JMM
    Faham, M
    Moorhead, M
    Jones, HB
    Falkowski, M
    Hardenbol, P
    Willis, TD
    Todd, JA
    [J]. NATURE GENETICS, 2005, 37 (11) : 1243 - 1246
  • [4] A human type 1 diabetes susceptibility locus maps to chromosome 21q22.3
    Concannon, Patrick
    Onengut-Gumuscu, Suna
    Todd, John A.
    Smyth, Deborah J.
    Pociot, Flemming
    Bergholdt, Regine
    Akolkar, Beena
    Erlich, Henry A.
    Hilner, Joan E.
    Julier, Cecile
    Morahan, Grant
    Nerup, Jorn
    Nierras, Concepcion R.
    Chen, Wei-Min
    Rich, Stephen S.
    [J]. DIABETES, 2008, 57 (10) : 2858 - 2861
  • [5] A novel susceptibility locus for type 1 diabetes on Chr12q13 identified by a genome-wide association study
    Hakonarson, Hakon
    Qu, Hui-Qi
    Bradfield, Jonathan P.
    Marchand, Luc
    Kim, Cecilia E.
    Glessner, Joseph T.
    Grabs, Rosemarie
    Casalunovo, Tracy
    Taback, Shayne P.
    Frackelton, Edward C.
    Eckert, Andrew W.
    Annaiah, Kiran
    Lawson, Margaret L.
    Otieno, F. George
    Santa, Erin
    Shaner, Julie L.
    Smith, Ryan M.
    Onyiah, Chioma C.
    Skraban, Robert
    Chiavacci, Rosetta M.
    Robinson, Luke J.
    Stanley, Charles A.
    Kirsch, Susan E.
    Devoto, Marcella
    Monos, Dimitri S.
    Grant, Struan F. A.
    Polychronakos, Constantin
    [J]. DIABETES, 2008, 57 (04) : 1143 - 1146
  • [6] Protein kinase C theta (PKCθ):: A key player in T cell life and death
    Hayashi, Keitaro
    Altman, Amnon
    [J]. PHARMACOLOGICAL RESEARCH, 2007, 55 (06) : 537 - 544
  • [7] The role of Bach2 in nucleic acid-triggered antiviral innate immune responses
    Hong, Sun Woo
    Kim, Soyoun
    Lee, Dong-Ki
    [J]. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2008, 365 (03) : 426 - 432
  • [8] Large-scale genetic fine mapping and genotype-phenotype associations implicate polymorphism in the IL2RA region in type 1 diabetes
    Lowe, Christopher E.
    Cooper, Jason D.
    Brusko, Todd
    Walker, Neil M.
    Smyth, Deborah J.
    Bailey, Rebecca
    Bourget, Kirsi
    Plagnol, Vincent
    Field, Sarah
    Atkinson, Mark
    Clayton, David G.
    Wicker, Linda S.
    Todd, John A.
    [J]. NATURE GENETICS, 2007, 39 (09) : 1074 - 1082
  • [9] New models of collaboration in genome-wide association studies: the Genetic Association Information Network
    Manolio, Teri A.
    Rodriguez, Laura Lyman
    Brooks, Lisa
    Abecasis, Goncalo
    Ballinger, Dennis
    Daly, Mark
    Donnelly, Peter
    Faraone, Stephen V.
    Frazer, Kelly
    Gabriel, Stacey
    Gejman, Pablo
    Guttmacher, Alan
    Harris, Emily L.
    Insel, Thomas
    Kelsoe, John R.
    Lander, Eric
    McCowin, Norma
    Mailman, Matthew D.
    Nabel, Elizabeth
    Ostell, James
    Pugh, Elizabeth
    Sherry, Stephen
    Sullivan, Patrick F.
    Thompson, John F.
    Warram, James
    Study, GoKinD
    Wholley, David
    Milos, Patrice M.
    Collins, Francis S.
    [J]. NATURE GENETICS, 2007, 39 (09) : 1045 - 1051
  • [10] Genetics of Kidneys in Diabetes (GoKinD) study: A genetics collection available for identifying genetic susceptibility factors for diabetic nephropathy in type 1 diabetes
    Mueller, Patricia W.
    Rogus, John J.
    Cleary, Patricia A.
    Zhao, Yuan
    Smiles, Adam M.
    Steffes, Michael W.
    Bucksa, Jean
    Gibson, Therese B.
    Cordovado, Suzanne K.
    Krolewski, Andrzej S.
    Nierras, Concepcion R.
    Warram, James H.
    [J]. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 2006, 17 (07): : 1782 - 1790