PATH:: a task for the inference of phylogenies

被引:3
作者
del Val, C [1 ]
Ernst, P [1 ]
Bräuning, R [1 ]
Glatting, KH [1 ]
Suhai, S [1 ]
机构
[1] DKFZ, Dept Mol Biophys, D-69120 Heidelberg, Germany
关键词
D O I
10.1093/bioinformatics/18.4.646
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Phylogenetic Analysis Task in Husar (PATH) is a task for the inference of phylogenies. It executes three phylogenetic methods and automatically chooses the evolutionary model for each set of data. The output of the tasks shows the consensus trees together with full results obtained from all executed methods. Availability: PATH is available at the German EMBnet node after registration via www at http://genome.dkfz-heidelberg.de Contact: genome@dkfz.de.
引用
收藏
页码:646 / 647
页数:2
相关论文
共 11 条
[1]   Split Decomposition: A New and Useful Approach to Phylogenetic Analysis of Distance Data [J].
Bandelt, Hans-Juergen ;
Dress, Andreas W. M. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 1992, 1 (03) :242-252
[2]   A COMPREHENSIVE SET OF SEQUENCE-ANALYSIS PROGRAMS FOR THE VAX [J].
DEVEREUX, J ;
HAEBERLI, P ;
SMITHIES, O .
NUCLEIC ACIDS RESEARCH, 1984, 12 (01) :387-395
[3]   Analyzing and visualizing sequence and distance data using SPLITSTREE [J].
Dress, A ;
Huson, D ;
Moulton, V .
DISCRETE APPLIED MATHEMATICS, 1996, 71 (1-3) :95-109
[4]  
Felsenstein J., 1989, CLADISTICS, V5, P164, DOI DOI 10.1111/J.1096-0031.1989.TB00562.X
[5]   Phylogenetic information and experimental design in molecular systematics [J].
Goldman, N .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1998, 265 (1407) :1779-1786
[6]   SplitsTree: analyzing and visualizing evolutionary data [J].
Huson, DH .
BIOINFORMATICS, 1998, 14 (01) :68-73
[7]  
JIN L, 1990, MOL BIOL EVOL, V7, P82
[8]   W2H: WWW interface to the GCG sequence analysis package [J].
Senger, M ;
Flores, T ;
Glatting, KH ;
Ernst, P ;
Hotz-Wagenblatt, A ;
Suhai, S .
BIOINFORMATICS, 1998, 14 (05) :452-457
[9]   Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies [J].
Strimmer, K ;
vonHaeseler, A .
MOLECULAR BIOLOGY AND EVOLUTION, 1996, 13 (07) :964-969
[10]   CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE [J].
THOMPSON, JD ;
HIGGINS, DG ;
GIBSON, TJ .
NUCLEIC ACIDS RESEARCH, 1994, 22 (22) :4673-4680