Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy

被引：1160

作者：

Kadoch, Cigall ^{[1
,2
,3
,4
]}

Hargreaves, Diana C. ^{[2
,3
,4
]}

Hodges, Courtney ^{[2
,3
,4
]}

Elias, Laura ^{[2
,3
,4
]}

Ho, Lena ^{[2
,3
,4
]}

Ranish, Jeff ^{[5
]}

Crabtree, Gerald R. ^{[1
,2
,3
,4
]}

机构：

[1] Howard Hughes Med Inst, Chevy Chase, MD USA

[2] Stanford Univ, Sch Med, Program Canc Biol, Stanford, CA 94305 USA

[3] Stanford Univ, Sch Med, Dept Pathol, Stanford, CA 94305 USA

[4] Stanford Univ, Sch Med, Dept Dev Biol, Stanford, CA 94305 USA

[5] Inst Syst Biol, Seattle, WA USA

来源：

NATURE GENETICS | 2013年 / 45卷 / 06期

基金：

美国国家卫生研究院; 美国国家科学基金会;

关键词：

CHROMATIN REMODELING COMPLEX; ACUTE LYMPHOBLASTIC-LEUKEMIA; COMPREHENSIVE GENOMIC CHARACTERIZATION; HISTONE-MODIFYING GENES; SQUAMOUS-CELL CARCINOMA; HUMAN SYNOVIAL SARCOMA; SWI-SNF COMPLEX; SOMATIC MUTATIONS; FREQUENT MUTATION; TUMOR-SUPPRESSOR;

D O I：

10.1038/ng.2628

中图分类号：

Q3 [遗传学];

学科分类号：

071007 [遗传学];

摘要：

Subunits of mammalian SWI/SNF (mSWI/SNF or BAF) complexes have recently been implicated as tumor suppressors in human malignancies. To understand the full extent of their involvement, we conducted a proteomic analysis of endogenous mSWI/SNF complexes, which identified several new dedicated, stable subunits not found in yeast SWI/SNF complexes, including BCL7A, BCL7B and BCL7C, BCL11A and BCL11B, BRD9 and SS18. Incorporating these new members, we determined mSWI/SNF subunit mutation frequency in exome and whole-genome sequencing studies of primary human tumors. Notably, mSWI/SNF subunits are mutated in 19.6% of all human tumors reported in 44 studies. Our analysis suggests that specific subunits protect against cancer in specific tissues. In addition, mutations affecting more than one subunit, defined here as compound heterozygosity, are prevalent in certain cancers. Our studies demonstrate that mSWI/SNF is the most frequently mutated chromatin-regulatory complex (CRC) in human cancer, exhibiting a broad mutation pattern, similar to that of TP53. Thus, proper functioning of polymorphic BAF complexes may constitute a major mechanism of tumor suppression.

引用

页码：592 / +

页数：11

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