Genome information resources - developments at Ensembl

被引：25

作者：

Hammond, MP ^{[1
]}

Birney, E ^{[1
]}

机构：

[1] European Bioinformat Inst EMBL EBI, Cambridge CB10 1SD, England

来源：

TRENDS IN GENETICS | 2004年 / 20卷 / 06期

基金：

英国惠康基金;

关键词：

D O I：

10.1016/j.tig.2004.04.002

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Genome information resources such as Ensembl manage and present DNA sequence and annotation arising from genome projects. Recent developments in the Ensembl system include access to inter-species comparisons at both the genomic and protein sequence levels and improvements to the display of polymorphism data. Users can now display their own data in the context of other annotation. In addition, a fast and flexible data retrieval system, EnsMart, has been developed.

引用

页码：268 / 272

页数：5

共 15 条

[1] Gene annotation: Prediction and testing [J].

Ashurst, JL ;

Collins, JE .

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2003, 4 :69-88

[2] Databases and tools for browsing genomes [J].

Birney, E ;

Clamp, M ;

Hubbard, T .

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2002, 3 :293-310

[3] Ensembl 2002: accommodating comparative genomics [J].

Clamp, M ;

Andrews, D ;

Barker, D ;

Bevan, P ;

Cameron, G ;

Chen, Y ;

Clark, L ;

Cox, T ;

Cuff, J ;

Curwen, V ;

Down, T ;

Durbin, R ;

Eyras, E ;

Gilbert, J ;

Hammond, M ;

Hubbard, T ;

Kasprzyk, A ;

Keefe, D ;

Lehvaslaiho, H ;

Iyer, V ;

Melsopp, C ;

Mongin, E ;

Pettett, R ;

Potter, S ;

Rust, A ;

Schmidt, E ;

Searle, S ;

Slater, G ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Stupka, E ;

Ureta-Vidal, A ;

Vastrik, I ;

Birney, E .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :38-42

[4] A first-generation linkage disequilibrium map of human chromosome 22 [J].

Dawson, E ;

Abecasis, GR ;

Bumpstead, S ;

Chen, Y ;

Hunt, S ;

Beare, DM ;

Pabial, J ;

Dibling, T ;

Tinsley, E ;

Kirby, S ;

Carter, D ;

Papaspyridonos, M ;

Livingstone, S ;

Ganske, R ;

Lohmmussaar, E ;

Zernant, J ;

Tonisson, N ;

Remm, M ;

Mägi, R ;

Puurand, T ;

Vilo, J ;

Kurg, A ;

Rice, K ;

Deloukas, P ;

Mott, R ;

Metspalu, A ;

Bentley, DR ;

Cardon, LR ;

Dunham, I .

NATURE, 2002, 418 (6897) :544-548

[5] The Distributed Annotation System [J].

Dowell, Robin D. ;

Jokerst, Rodney M. ;

Day, Allen ;

Eddy, Sean R. ;

Stein, Lincoln .

BMC BIOINFORMATICS, 2001, 2 (1)

[6] An efficient algorithm for large-scale detection of protein families [J].

Enright, AJ ;

Van Dongen, S ;

Ouzounis, CA .

NUCLEIC ACIDS RESEARCH, 2002, 30 (07) :1575-1584

[7] The International HapMap Project [J].

Gibbs, RA ;

Belmont, JW ;

Hardenbol, P ;

Willis, TD ;

Yu, FL ;

Yang, HM ;

Ch'ang, LY ;

Huang, W ;

Liu, B ;

Shen, Y ;

Tam, PKH ;

Tsui, LC ;

Waye, MMY ;

Wong, JTF ;

Zeng, CQ ;

Zhang, QR ;

Chee, MS ;

Galver, LM ;

Kruglyak, S ;

Murray, SS ;

Oliphant, AR ;

Montpetit, A ;

Hudson, TJ ;

Chagnon, F ;

Ferretti, V ;

Leboeuf, M ;

Phillips, MS ;

Verner, A ;

Kwok, PY ;

Duan, SH ;

Lind, DL ;

Miller, RD ;

Rice, JP ;

Saccone, NL ;

Taillon-Miller, P ;

Xiao, M ;

Nakamura, Y ;

Sekine, A ;

Sorimachi, K ;

Tanaka, T ;

Tanaka, Y ;

Tsunoda, T ;

Yoshino, E ;

Bentley, DR ;

Deloukas, P ;

Hunt, S ;

Powell, D ;

Altshuler, D ;

Gabriel, SB ;

Qiu, RZ .

NATURE, 2003, 426 (6968) :789-796

[8] The Ensembl genome database project [J].

Hubbard, T ;

Barker, D ;

Birney, E ;

Cameron, G ;

Chen, Y ;

Clark, L ;

Cox, T ;

Cuff, J ;

Curwen, V ;

Down, T ;

Durbin, R ;

Eyras, E ;

Gilbert, J ;

Hammond, M ;

Huminiecki, L ;

Kasprzyk, A ;

Lehvaslaiho, H ;

Lijnzaad, P ;

Melsopp, C ;

Mongin, E ;

Pettett, R ;

Pocock, M ;

Potter, S ;

Rust, A ;

Schmidt, E ;

Searle, S ;

Slater, G ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Stupka, E ;

Ureta-Vidal, A ;

Vastrik, I ;

Clamp, M .

NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :38-41

[9] EnsMart: A generic system for fast and flexible access to biological data [J].

Kasprzyk, A ;

Keefe, D ;

Smedley, D ;

London, D ;

Spooner, W ;

Melsopp, C ;

Hammond, M ;

Rocca-Serra, P ;

Cox, T ;

Birney, E .

GENOME RESEARCH, 2004, 14 (01) :160-169

[10] The human genome browser at UCSC [J].

Kent, WJ ;

Sugnet, CW ;

Furey, TS ;

Roskin, KM ;

Pringle, TH ;

Zahler, AM ;

Haussler, D .

GENOME RESEARCH, 2002, 12 (06) :996-1006

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