Synchrony and entrainment properties of robust circadian oscillators

被引:31
作者
Bagheri, Neda [2 ]
Taylor, Stephanie R. [3 ]
Meeker, Kirsten [3 ]
Petzold, Linda R. [3 ]
Doyle, Francis J., III [1 ,4 ]
机构
[1] Univ Calif Santa Barbara, Dept Chem Engn, Santa Barbara, CA 93106 USA
[2] Univ Calif Santa Barbara, Dept Elect & Comp Engn, Santa Barbara, CA 93106 USA
[3] Univ Calif Santa Barbara, Dept Comp Sci, Santa Barbara, CA 93106 USA
[4] Univ Calif Santa Barbara, Dept Biomol Sci & Engn, Santa Barbara, CA 93106 USA
关键词
circadian clocks; phase response curves; coupled oscillators; control; stochastic simulations;
D O I
10.1098/rsif.2008.0045.focus
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Systems theoretic tools (i.e. mathematical modelling, control, and feedback design) advance the understanding of robust performance in complex biological networks. We highlight phase entrainment as a key performance measure used to investigate dynamics of a single deterministic circadian oscillator for the purpose of generating insight into the behaviour of a population of (synchronized) oscillators. More specifically, the analysis of phase characteristics may facilitate the identification of appropriate coupling mechanisms for the ensemble of noisy (stochastic) circadian clocks. Phase also serves as a critical control objective to correct mismatch between the biological clock and its environment. Thus, we introduce methods of investigating synchrony and entrainment in both stochastic and deterministic frameworks, and as a property of a single oscillator or population of coupled oscillators.
引用
收藏
页码:S17 / S28
页数:12
相关论文
共 46 条
[1]  
[Anonymous], 1997, APPL MATH SCI
[2]   Vasoactive intestinal polypeptide mediates circadian rhythmicity and synchrony in mammalian clock neurons [J].
Aton, SJ ;
Colwell, CS ;
Harmar, AJ ;
Waschek, J ;
Herzog, ED .
NATURE NEUROSCIENCE, 2005, 8 (04) :476-483
[3]   Circadian phase entrainment via nonlinear model predictive control [J].
Bagheri, N. ;
Stelling, J. ;
Doyle, F. J., III .
INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL, 2007, 17 (17) :1555-1571
[4]   Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus [J].
Bernard, Samuel ;
Gonze, Didier ;
Cajavec, Branka ;
Herzel, Hanspeter ;
Kramer, Achim .
PLOS COMPUTATIONAL BIOLOGY, 2007, 3 (04) :667-679
[5]   Dose-response relationships for resetting of human circadian clock by light [J].
Boivin, DB ;
Duffy, JF ;
Kronauer, RE ;
Czeisler, CA .
NATURE, 1996, 379 (6565) :540-542
[6]  
Boulos Z, 2002, AVIAT SPACE ENVIR MD, V73, P953
[7]   On the phase reduction and response dynamics of neural oscillator populations [J].
Brown, E ;
Moehlis, J ;
Holmes, P .
NEURAL COMPUTATION, 2004, 16 (04) :673-715
[8]   FUNCTIONAL-ANALYSIS OF CIRCADIAN PACEMAKERS IN NOCTURNAL RODENTS .2. VARIABILITY OF PHASE RESPONSE CURVES [J].
DAAN, S ;
PITTENDRIGH, CS .
JOURNAL OF COMPARATIVE PHYSIOLOGY, 1976, 106 (03) :253-266
[9]  
Dunlap J.C., 2003, CHRONOBIOLOGY BIOL T
[10]  
Fall C., 2005, COMPUTATIONAL CELL B