BioJS']JS: an open source Java']JavaScript framework for biological data visualization

被引：59

作者：

Gomez, John ^{[1
]}

Garcia, Leyla J. ^{[1
]}

Salazar, Gustavo A. ^{[2
]}

Villaveces, Jose ^{[3
]}

Gore, Swanand ^{[1
]}

Garcia, Alexander ^{[4
]}

Martin, Maria J. ^{[1
]}

Launay, Guillaume ^{[5
]}

Alcantara, Rafael ^{[1
]}

del-Toro, Noemi ^{[1
]}

Dumousseau, Marine ^{[1
]}

Orchard, Sandra ^{[1
]}

Velankar, Sameer ^{[1
]}

Hermjakob, Henning ^{[1
]}

Zong, Chenggong ^{[6
,7
]}

Ping, Peipei ^{[6
,7
]}

Corpas, Manuel ^{[8
]}

Jimenez, Rafael C. ^{[1
]}

机构：

[1] European Bioinformat Inst, Cambridge CB10 1SD, England

[2] Univ Cape Town, Computat Biol Grp, Dept Clin Lab Sci, ZA-7925 Cape Town, South Africa

[3] Max Planck Inst Biol Ageing, D-50931 Cologne, Germany

[4] Florida State Univ, Inst Digital Informat & Sci Commun, Tallahassee, FL 32306 USA

[5] Univ Lyon 1, Inst Biol & Chim Prot, CNRS, UMR 5086,IFR Biosci Gerland Lyon Sud 128, F-69367 Lyon 07, France

[6] Univ Calif Los Angeles, David Geffen Sch Med, Cardiovasc Res Lab, Div Cardiol,Dept Physiol, Los Angeles, CA 90095 USA

[7] Univ Calif Los Angeles, David Geffen Sch Med, Cardiovasc Res Lab, Div Cardiol,Dept Med, Los Angeles, CA 90095 USA

[8] Genome Anal Ctr, Norwich NR4 7UH, Norfolk, England

来源：

BIOINFORMATICS | 2013年 / 29卷 / 08期

基金：

英国生物技术与生命科学研究理事会;

关键词：

BIOINFORMATICS;

D O I：

10.1093/bioinformatics/btt100

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

BioJS is an open-source project whose main objective is the visualization of biological data in JavaScript. BioJS provides an easy-to-use consistent framework for bioinformatics application programmers. It follows a community-driven standard specification that includes a collection of components purposely designed to require a very simple configuration and installation. In addition to the programming framework, BioJS provides a centralized repository of components available for reutilization by the bioinformatics community.

引用

页码：1103 / 1104

页数：2

共 7 条

[1] Biopython']python: freely available Python']Python tools for computational molecular biology and bioinformatics
Cock, Peter J. A.
Antao, Tiago
Chang, Jeffrey T.
Chapman, Brad A.
Cox, Cymon J.
Dalke, Andrew
Friedberg, Iddo
Hamelryck, Thomas
Kauff, Frank
Wilczynski, Bartek
de Hoon, Michiel J. L.
[J]. BIOINFORMATICS, 2009, 25 (11) : 1422 - 1423
[2] Extending CATH: increasing coverage of the protein structure universe and linking structure with function
Cuff, Alison L.
Sillitoe, Ian
Lewis, Tony
Clegg, Andrew B.
Rentzsch, Robert
Furnham, Nicholas
Pellegrini-Calace, Marialuisa
Jones, David
Thornton, Janet
Orengo, Christine A.
[J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D420 - D426
[3] Garcia-Castro L.J., 2012, INT WORKSH SEM WEB A
[4] BioRuby: bioinformatics software for the Ruby programming language
Goto, Naohisa
Prins, Pjotr
Nakao, Mitsuteru
Bonnal, Raoul
Aerts, Jan
Katayama, Toshiaki
[J]. BIOINFORMATICS, 2010, 26 (20) : 2617 - 2619
[5] The IntAct molecular interaction database in 2012
Kerrien, Samuel
Aranda, Bruno
Breuza, Lionel
Bridge, Alan
Broackes-Carter, Fiona
Chen, Carol
Duesbury, Margaret
Dumousseau, Marine
Feuermann, Marc
Hinz, Ursula
Jandrasits, Christine
Jimenez, Rafael C.
Khadake, Jyoti
Mahadevan, Usha
Masson, Patrick
Pedruzzi, Ivo
Pfeiffenberger, Eric
Porras, Pablo
Raghunath, Arathi
Roechert, Bernd
Orchard, Sandra
Hermjakob, Henning
[J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) : D841 - D846
[6] BioJava']Java: an open-source framework for bioinformatics in 2012
Prlic, Andreas
Yates, Andrew
Bliven, Spencer E.
Rose, Peter W.
Jacobsen, Julius
Troshin, Peter V.
Chapman, Mark
Gao, Jianjiong
Koh, Chuan Hock
Foisy, Sylvain
Holland, Richard
Rimsa, Gediminas
Heuer, Michael L.
Brandstaetter-Mueller, H.
Bourne, Philip E.
Willis, Scooter
[J]. BIOINFORMATICS, 2012, 28 (20) : 2693 - 2695
[7] The bioperl toolkit:: Perl modules for the life sciences
Stajich, JE
Block, D
Boulez, K
Brenner, SE
Chervitz, SA
Dagdigian, C
Fuellen, G
Gilbert, JGR
Korf, I
Lapp, H
Lehväslaiho, H
Matsalla, C
Mungall, CJ
Osborne, BI
Pocock, MR
Schattner, P
Senger, M
Stein, LD
Stupka, E
Wilkinson, MD
Birney, E
[J]. GENOME RESEARCH, 2002, 12 (10) : 1611 - 1618

← 1 →