Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)

被引:151
作者
Jiang, N [1 ]
Feschotte, C [1 ]
Zhang, XY [1 ]
Wessler, SR [1 ]
机构
[1] Univ Georgia, Dept Plant Biol & Genet, Athens, GA 30602 USA
基金
美国国家科学基金会;
关键词
D O I
10.1016/j.pbi.2004.01.004
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Recent studies of rice miniature inverted repeat transposable elements (MITEs), largely fueled by the availability of genomic sequence, have provided answers to many of the outstanding questions regarding the existence of active MITEs, their source of transposases (TPases) and their chromosomal distribution. Although many questions remain about MITE origins and mode of amplification, data accumulated over the past two years have led to the formulation of testable models.
引用
收藏
页码:115 / 119
页数:5
相关论文
共 47 条
  • [1] Micron, a microsatellite-targeting transposable element in the rice genome
    Akagi, H
    Yokozeki, Y
    Inagaki, A
    Mori, K
    Fujimura, T
    [J]. MOLECULAR GENETICS AND GENOMICS, 2001, 266 (03) : 471 - 480
  • [2] Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    Aparicio, S
    Chapman, J
    Stupka, E
    Putnam, N
    Chia, J
    Dehal, P
    Christoffels, A
    Rash, S
    Hoon, S
    Smit, A
    Gelpke, MDS
    Roach, J
    Oh, T
    Ho, IY
    Wong, M
    Detter, C
    Verhoef, F
    Predki, P
    Tay, A
    Lucas, S
    Richardson, P
    Smith, SF
    Clark, MS
    Edwards, YJK
    Doggett, N
    Zharkikh, A
    Tavtigian, SV
    Pruss, D
    Barnstead, M
    Evans, C
    Baden, H
    Powell, J
    Glusman, G
    Rowen, L
    Hood, L
    Tan, YH
    Elgar, G
    Hawkins, T
    Venkatesh, B
    Rokhsar, D
    Brenner, S
    [J]. SCIENCE, 2002, 297 (5585) : 1301 - 1310
  • [3] Automated de novo identification of repeat sequence families in sequenced genomes
    Bao, ZR
    Eddy, SR
    [J]. GENOME RESEARCH, 2002, 12 (08) : 1269 - 1276
  • [4] Bennetzen JL, 1997, PLANT CELL, V9, P1509, DOI 10.1105/tpc.9.9.1509
  • [5] TOURIST - A LARGE FAMILY OF SMALL INVERTED REPEAT ELEMENTS FREQUENTLY ASSOCIATED WITH MAIZE GENES
    BUREAU, TE
    WESSLER, SR
    [J]. PLANT CELL, 1992, 4 (10) : 1283 - 1294
  • [6] STOWAWAY - A NEW FAMILY OF INVERTED REPEAT ELEMENTS ASSOCIATED WITH THE GENES OF BOTH MONOCOTYLEDONOUS AND DICOTYLEDONOUS PLANTS
    BUREAU, TE
    WESSLER, SR
    [J]. PLANT CELL, 1994, 6 (06) : 907 - 916
  • [7] A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes
    Bureau, TE
    Ronald, PC
    Wessler, SR
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (16) : 8524 - 8529
  • [8] CAPY P, 1998, DYNAMICS EVOLUTION T
  • [9] Presence of miniature inverted-repeat transposable elements (MITEs) in the genome of Arabidopsis thaliana:: characterisation of the Emigrant family of elements
    Casacuberta, E
    Casacuberta, JM
    Puigdomenech, P
    Monfort, A
    [J]. PLANT JOURNAL, 1998, 16 (01) : 79 - 85
  • [10] Bigfoot:: a new family of MITE elements characterized from the Medicago genus
    Charrier, B
    Foucher, F
    Kondorosi, E
    d'Aubenton-Carafa, Y
    Thermes, C
    Kondorosi, A
    Ratet, P
    [J]. PLANT JOURNAL, 1999, 18 (04) : 431 - 441