Synthesis Explorer: A Chemical Reaction Tutorial System for Organic Synthesis Design and Mechanism Prediction

被引:28
作者
Chen, Jonathan H. [1 ]
Baldi, Pierre
机构
[1] Univ Calif Irvine, Inst Genom & Bioinformat, Irvine, CA 92697 USA
基金
美国国家科学基金会;
关键词
D O I
10.1021/ed085p1699
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The Synthesis Explorer system specializes in challenging problems of reactivity in organic chemistry, particularly reaction product prediction, mechanism prediction, and multi-step synthesis design. From our experience, the system's support of a mix of random and pre-constructed problems works best with random problems for extensive practice and pre-constructed problems for targeted testing and evaluation. The system is built on an underlying expert system whose inherent predictive power enables a richer learning experience through experimentation and interactive dialogue with customized feedback in the form of both text and predicted chemical structures. The majority of reagents covered in a second-year organic chemistry curriculum are already modeled within the system, and new reagents and reaction mechanisms are being added periodically. Mechanism prediction problems have recently been added alongside the existing synthesis design problems. Other features that could be pursued in the future include the capability to automatically assess the student's abilities and dynamically tailor the problems to fit the student's particular strengths and weaknesses. The expert system upon which Synthesis Explorer is built has been presented in an educational setting, to facilitate the learning of chemistry in ways previously unrealized. But the same expert system can be used in other applications in chemical informatics and modeling. For example, computerized retro-synthesis decision support systems (21, 22) could be based on the same technology. In fact, the underlying expert system is already being used to help solve the very kinds of synthesis problems generated by Synthesis Explorer (23). As the content and robustness of chemical expert systems expand, these will become useful not only to undergraduate students, but also to professional chemists. © Division of Chemical Education.
引用
收藏
页码:1699 / 1703
页数:5
相关论文
共 19 条
[1]   Assessing the effect of Web-based learning tools on student understanding of stoichiometry - Using knowledge space theory [J].
Arasasingham, RD ;
Taagepera, M ;
Potter, F ;
Martorell, I ;
Lonjers, S .
JOURNAL OF CHEMICAL EDUCATION, 2005, 82 (08) :1251-1262
[2]  
Bruice P. Y., 2004, ORGANIC CHEM
[3]   EPOCH: An organic chemistry homework program that offers response-specific feedback to students [J].
Chamala, RR ;
Ciochina, R ;
Grossman, RB ;
Finkel, RA ;
Kannan, S ;
Ramachandran, P .
JOURNAL OF CHEMICAL EDUCATION, 2006, 83 (01) :164-169
[4]  
*CHEMDB, CHEMDB WEB INT IND
[5]   ChemDB update - full-text search and virtual chemical space [J].
Chen, Jonathan H. ;
Linstead, Erik ;
Swamidass, S. Joshua ;
Wang, Dennis ;
Baldi, Pierre .
BIOINFORMATICS, 2007, 23 (17) :2348-2351
[6]   INTRODUCTION TO KNOWLEDGE SPACES - HOW TO BUILD, TEST, AND SEARCH THEM [J].
FALMAGNE, JC ;
DOIGNON, JP ;
KOPPEN, M ;
VILLANO, M ;
JOHANNESEN, L .
PSYCHOLOGICAL REVIEW, 1990, 97 (02) :201-224
[7]  
FREDERIKSEN N, 1984, REV EDUC RES, V54, P363, DOI 10.3102/00346543054003363
[8]   Computer-assisted synthesis and reaction planning in combinatorial chemistry [J].
Gasteiger, J ;
Pförtner, M ;
Sitzmann, M ;
Höllering, R ;
Sacher, O ;
Kostka, T ;
Karg, N .
PERSPECTIVES IN DRUG DISCOVERY AND DESIGN, 2000, 20 (01) :245-264
[9]  
Hanessian S, 2005, CURR OPIN DRUG DISC, V8, P798
[10]  
James C., 2008, DAYLIGHT THEORY MANU