Anomalous signal of solvent bromides used for phasing of lysozyme

被引:71
作者
Dauter, Z [1 ]
Dauter, N [1 ]
机构
[1] Natl Canc Inst, Frederick & Brookhaven Natl Lab, Upton, NY 11973 USA
关键词
anomalous scattering; single wavelength; solvent bromide ions; phasing; lysozyme;
D O I
10.1006/jmbi.1999.2744
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The anomalous signal of bromide ions, present in the crystal structure of tetragonal hen egg-white lysozyme through the substitution of NaCl by NaBr in the crystallization medium, was used for phasing of X-ray data collected to 1.7 Angstrom resolution with a wavelength near the absorption edge of bromine. Phasing of a single wavelength data set, based purely on anomalous delta f " contribution, led to easily interpretable electron density, equivalent to the complete multiwavelength anonalous dispersion phasing based on four-wavelength data. The classic small-structure direct methods program SHELXS run against all anomalous differences gave a successful solution of six highest peaks corresponding to six bromide ions in the structure with data limited up to a resolution of 3.5 Angstrom. Interpretable maps were obtained at a resolution up to 3.0 Angstrom using programs MLPHARE and DM. Bromide ions occupy well ordered positions at the protein surface. Phasing based on the single wavelength signal of anomalous scatterers introduced into the ordered solvent shell can be proposed as a tool for solving structures of well diffracting crystals. (C) 1999 Academic Press.
引用
收藏
页码:93 / 101
页数:9
相关论文
共 23 条
  • [1] THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY
    BAILEY, S
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 : 760 - 763
  • [2] ON CONFORMATION OF HEN EGG-WHITE LYSOZYME MOLECULE
    BLAKE, CCF
    MAIR, GA
    NORTH, ACT
    PHILLIPS, DC
    SARMA, VR
    [J]. PROCEEDINGS OF THE ROYAL SOCIETY SERIES B-BIOLOGICAL SCIENCES, 1967, 167 (1009): : 365 - +
  • [3] Cowtan K., 1994, JOINT CCP4 ESF EACBM, V31, P34
  • [5] Remarks about protein structure precision
    Cruickshank, DWJ
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1999, 55 : 583 - 601
  • [6] Can anomalous signal of sulfur become a tool for solving protein crystal structures?
    Dauter, Z
    Dauter, M
    de La Fortelle, E
    Bricogne, G
    Sheldrick, GM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 289 (01) : 83 - 92
  • [7] THE MULTIWAVELENGTH ANOMALOUS SOLVENT CONTRAST (MASC) METHOD IN MACROMOLECULAR CRYSTALLOGRAPHY
    FOURME, R
    SHEPARD, W
    KAHN, R
    LHERMITE, G
    DELASIERRA, IL
    [J]. JOURNAL OF SYNCHROTRON RADIATION, 1995, 2 : 36 - 48
  • [8] TREATMENT OF NEGATIVE INTENSITY OBSERVATIONS
    FRENCH, S
    WILSON, K
    [J]. ACTA CRYSTALLOGRAPHICA SECTION A, 1978, 34 (JUL): : 517 - 525
  • [9] Structure determination of a 16.8 kDa copper protein at 2.1 Å resolution using anomalous scattering data with direct methods
    Harvey, I
    Hao, Q
    Duke, EMH
    Ingledew, WJ
    Hasnain, SS
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1998, 54 : 629 - 635
  • [10] STRUCTURE OF THE HYDROPHOBIC PROTEIN CRAMBIN DETERMINED DIRECTLY FROM THE ANOMALOUS SCATTERING OF SULFUR
    HENDRICKSON, WA
    TEETER, MM
    [J]. NATURE, 1981, 290 (5802) : 107 - 113