Sall4 Regulates Distinct Transcription Circuitries in Different Blastocyst-Derived Stem Cell Lineages

被引:191
作者
Lim, Chin Yan
Tam, Wai-Leong [1 ]
Zhang, Jinqiu
Ang, Haw Siang [3 ]
Jia, Hui [1 ]
Lipovich, Leonard [1 ]
Ng, Huck-Hui [4 ]
Wei, Chia-Lin [2 ]
Sung, Wing Kin [1 ]
Robson, Paul [4 ]
Yang, Henry [3 ]
Lim, Bing [5 ]
机构
[1] Genome Inst Singapore, Informat & Math Sci Grp, Singapore 138672, Singapore
[2] Genome Inst Singapore, Genome Technol & Biol Grp, Singapore 138672, Singapore
[3] Bioinformat Inst, Singapore 138671, Singapore
[4] Natl Univ Singapore, Dept Biol Sci, Singapore 117543, Singapore
[5] Harvard Univ, Sch Med, Harvard Inst Med, Boston, MA 02115 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1016/j.stem.2008.08.004
中图分类号
Q813 [细胞工程];
学科分类号
摘要
Stem cells self-renew or differentiate under the governance of a stem-cell-specific transcriptional program, with each transcription factor orchestrating the activities of a particular set of genes. Here we demonstrate that a single transcription factor is able to regulate distinct core circuitries in two different blastocyst-derived stem cell lines, embryonic stem cells (ESCs) and extraembryonic endoderm (XEN) cells. The transcription factor Sall4 is required for early embryonic development and for ESC pluripotency. Sall4 is also expressed in XEN cells, and depletion of Sall4 disrupts self-renewal and induces differentiation. Genome-wide analysis reveals that Sall4 is regulating different gene sets in ESCs and XEN cells, and depletion of Sall4 targets in the respective cell types induces differentiation. With Oct4, Sox2, and Nanog, Sall4 forms a crucial interconnected autoregulatory network in ESCs. In XEN cells, Sall4 regulates the key XEN lineage-associated genes Gata4, Gata6, Sox7, and Sox17. Our findings demonstrate how Sall4 functions as an essential sternness factor for two different stem cell lines.
引用
收藏
页码:543 / 554
页数:12
相关论文
共 42 条
[1]  
BEDDINGTON RSP, 1989, DEVELOPMENT, V105, P733
[2]   Core transcriptional regulatory circuitry in human embryonic stem cells [J].
Boyer, LA ;
Lee, TI ;
Cole, MF ;
Johnstone, SE ;
Levine, SS ;
Zucker, JR ;
Guenther, MG ;
Kumar, RM ;
Murray, HL ;
Jenner, RG ;
Gifford, DK ;
Melton, DA ;
Jaenisch, R ;
Young, RA .
CELL, 2005, 122 (06) :947-956
[3]   Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency [J].
Chamberlain, Stormy J. ;
Yee, Della ;
Magnuson, Terry .
STEM CELLS, 2008, 26 (06) :1496-1505
[4]   Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells [J].
Chambers, I ;
Colby, D ;
Robertson, M ;
Nichols, J ;
Lee, S ;
Tweedie, S ;
Smith, A .
CELL, 2003, 113 (05) :643-655
[5]   Early lineage segregation between epiblast and primitive endoderm in mouse blastocysts through the Grb2-MAPK pathway [J].
Chazaud, Claire ;
Yamanaka, Yojiro ;
Pawson, Tony ;
Rossant, Janet .
DEVELOPMENTAL CELL, 2006, 10 (05) :615-624
[6]   Integration of external signaling pathways with the core transcriptional network in embryonic stem cells [J].
Chen, Xi ;
Xu, Han ;
Yuan, Ping ;
Fang, Fang ;
Huss, Mikael ;
Vega, Vinsensius B. ;
Wong, Eleanor ;
Orlov, Yuriy L. ;
Zhang, Weiwei ;
Jiang, Jianming ;
Loh, Yuin-Han ;
Yeo, Hock Chuan ;
Yeo, Zhen Xuan ;
Narang, Vipin ;
Govindarajan, Kunde Ramamoorthy ;
Leong, Bernard ;
Shahab, Atif ;
Ruan, Yijun ;
Bourque, Guillaume ;
Sung, Wing-Kin ;
Clarke, Neil D. ;
Wei, Chia-Lin ;
Ng, Huck-Hui .
CELL, 2008, 133 (06) :1106-1117
[7]   A novel normalization method for effective removal of systematic variation in microarray data [J].
Chua, SW ;
Vijayakumar, P ;
Nissom, PM ;
Yam, CY ;
Wong, VVT ;
Yang, H .
NUCLEIC ACIDS RESEARCH, 2006, 34 (05)
[8]   Murine inner cell mass-derived lineages depend on SaII4 function [J].
Elling, Ulrich ;
Klasen, Christian ;
Eisenberger, Tobias ;
Anlag, Katrin ;
Treier, Mathias .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (44) :16319-16324
[9]   ESTABLISHMENT IN CULTURE OF PLURIPOTENTIAL CELLS FROM MOUSE EMBRYOS [J].
EVANS, MJ ;
KAUFMAN, MH .
NATURE, 1981, 292 (5819) :154-156
[10]  
Fortunel NO, 2003, SCIENCE, V302, P393