Block-adaptive quantum mechanics: An adaptive divide-and-conquer approach to interactive quantum chemistry

被引:8
作者
Bosson, Mael [1 ]
Grudinin, Sergei [1 ]
Redon, Stephane [1 ]
机构
[1] CNRS, Lab Jean Kuntzmann, NANO D INRIA Grenoble Rhone Alpes, F-38335 Saint Ismier, France
关键词
interactive quantum chemistry; reduced basis; adaptive; divide-and-conquer; ASED-MO; LOCALIZED MOLECULAR-ORBITALS; FROZEN DENSITY-MATRIX; IMPLEMENTATION; OPTIMIZATIONS;
D O I
10.1002/jcc.23157
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We present a novel Block-Adaptive Quantum Mechanics (BAQM) approach to interactive quantum chemistry. Although quantum chemistry models are known to be computationally demanding, we achieve interactive rates by focusing computational resources on the most active parts of the system. BAQM is based on a divide-and-conquer technique and constrains some nucleus positions and some electronic degrees of freedom on the fly to simplify the simulation. As a result, each time step may be performed significantly faster, which in turn may accelerate attraction to the neighboring local minima. By applying our approach to the nonself-consistent Atom Superposition and Electron Delocalization Molecular Orbital theory, we demonstrate interactive rates and efficient virtual prototyping for systems containing more than a thousand of atoms on a standard desktop computer. (c) 2012 Wiley Periodicals, Inc.
引用
收藏
页码:492 / 504
页数:13
相关论文
共 51 条
[1]  
Agullo E., 2011, 242 LAPACK
[2]   ELECTRON-DENSITY DISTRIBUTION-FUNCTIONS AND THE ASED-MO THEORY [J].
ANDERSON, AB .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 1994, 49 (05) :581-589
[3]  
[Anonymous], 1990, MATRIX PERTURBATION
[4]  
[Anonymous], MATH KERN LIB
[5]  
Artemova S., ARPS ADAPTIVELY REST
[6]   A parallel eigensolver for dense symmetric matrices based on multiple relatively robust representations [J].
Bientinesi, P ;
Dhillon, IS ;
Van de Geijn, RA .
SIAM JOURNAL ON SCIENTIFIC COMPUTING, 2005, 27 (01) :43-66
[7]  
Bosson M., 2012, J COMPUT CHEM, V18, P23
[8]   Interactive physically-based structural modeling of hydrocarbon systems [J].
Bosson, Mael ;
Grudinin, Sergei ;
Bouju, Xavier ;
Redon, Stephane .
JOURNAL OF COMPUTATIONAL PHYSICS, 2012, 231 (06) :2581-2598
[9]  
BREITMOSER E., PERFORMANCE STUDY PL
[10]   Real-space multigrid-based approach to large-scale electronic structure calculations [J].
Briggs, EL ;
Sullivan, DJ ;
Bernholc, J .
PHYSICAL REVIEW B, 1996, 54 (20) :14362-14375