Contributions of NMR spectroscopy to the study of hydrogen bonds in serine protease active sites

被引:82
作者
Bachovchin, WW [1 ]
机构
[1] Tufts Univ, Sch Med, Dept Biochem, Boston, MA 02111 USA
关键词
NMR; N-15; C-13; hydrogen bonding; serine protease; enzyme ring flip mechanism; catalytic triad; alpha lytic protease;
D O I
10.1002/mrc.951
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
This article is a chronology of NMR studies over the past three decades which have led to our present understanding of active site H-bonding in serine proteases. The story of H-bonding in this highly scrutinized family of enzymes, as revealed by NMR and x-ray crystallography, is to a large extent the foundation upon which our understanding of the catalytic mechanism of this archetypical enzyme system rests. Various theories have come into and out of favor as each bit of hard-earned evidence has been established, particularly with regard to the active-site imidazole, its state of protonation, its acid-base and tautomeric equilibrium constants and its H-bonding. Specific bioincorporation of N-15 and C-13 isotopic labels at the active site has proven especially useful in revealing the locations of protons and H-bond interactions through chemical shift and spin-coupling information, the latter useful also for spectral editing that reveals only the resonances of interest. However, the final chapter in the serine protease mechanism is yet to unfold. Currently competing proposals for the catalytic mechanism, one involving a low-barrier H-bond and the other a reaction driven histidine ring flip, are presented and discussed. Copyright (C) 2001 John Wiley & Sons, Ltd.
引用
收藏
页码:S199 / S213
页数:17
相关论文
共 93 条
[1]   PH-DEPENDENCE OF N-15 NMR SHIFTS AND COUPLING-CONSTANTS IN AQUEOUS IMIDAZOLE AND 1-METHYLIMIDAZOLE - COMMENTS ON ESTIMATION OF TAUTOMERIC EQUILIBRIUM-CONSTANTS FOR AQUEOUS HISTIDINE [J].
ALEI, M ;
MORGAN, LO ;
WAGEMAN, WE ;
WHALEY, TW .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1980, 102 (09) :2881-2887
[2]  
[Anonymous], [No title captured]
[3]  
ASH E, 1996, EXPT EVIDENCE HIS 57
[4]  
ASH E, 1998, THESIS TUFTS U SCH M, P262
[5]   Unusual 1H NMR chemical shifts support (His) Cε1-H••• O=C H-bond:: Proposal for reaction-driven ring flip mechanism in serine protease catalysis [J].
Ash, EL ;
Sudmeier, JL ;
Day, RM ;
Vincent, M ;
Torchilin, EV ;
Haddad, KC ;
Bradshaw, EM ;
Sanford, DG ;
Bachovchin, WW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (19) :10371-10376
[8]   CATALYTIC MECHANISM OF SERINE PROTEASES - RE-EXAMINATION OF THE PH-DEPENDENCE OF THE HISTIDYL 1J13C2-H COUPLING-CONSTANT IN THE CATALYTIC TRIAD OF ALPHA-LYTIC PROTEASE [J].
BACHOVCHIN, WW ;
KAISER, R ;
RICHARDS, JH ;
ROBERTS, JD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1981, 78 (12) :7323-7326
[9]   N-15 NMR-SPECTROSCOPY OF THE CATALYTIC-TRIAD HISTIDINE OF A SERINE PROTEASE IN PEPTIDE BORONIC ACID INHIBITOR COMPLEXES [J].
BACHOVCHIN, WW ;
WONG, WYL ;
FARRJONES, S ;
SHENVI, AB ;
KETTNER, CA .
BIOCHEMISTRY, 1988, 27 (20) :7689-7697
[10]   N-15 NUCLEAR MAGNETIC-RESONANCE SPECTROSCOPY - STATE OF HISTIDINE IN CATALYTIC TRIAD OF ALPHA-LYTIC PROTEASE - IMPLICATIONS FOR CHARGE-RELAY MECHANISM OF PEPTIDE-BOND CLEAVAGE BY SERINE PROTEASES [J].
BACHOVCHIN, WW ;
ROBERTS, JD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1978, 100 (26) :8041-8047