Entropy driven key-lock assembly

被引:41
作者
Odriozola, G. [1 ]
Jimenez-Angeles, F. [1 ]
Lozada-Cassou, M. [1 ]
机构
[1] Inst Mexicano Petr, Programa Ingn Mol, Mexico City 07730, DF, Mexico
关键词
D O I
10.1063/1.2981795
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The effective interaction between a sphere with an open cavity (lock) and a spherical macroparticle (key), both immersed in a hard sphere fluid, is studied by means of Monte Carlo simulations. As a result, a two-dimensional map of the key-lock effective interaction potential is constructed, which leads to the proposal of a self-assembling mechanism: There exists trajectories through which the key-lock pair could assemble avoiding trespassing potential barriers. Hence, solely the entropic contribution can induce their self-assembling even in the absence of attractive forces. This study points out the solvent contribution within the underlying mechanisms of substrate-protein assembly/disassembly processes, which are important steps of the enzyme catalysis and protein mediated transport. (c) 2008 American Institute of Physics. [DOI: 10.1063/1.2981795]
引用
收藏
页数:4
相关论文
共 26 条
[1]  
ARNOLD FH, 2001, NATURE, V299, P253
[2]   ON INTERACTION BETWEEN 2 BODIES IMMERSED IN A SOLUTION OF MACROMOLECULES [J].
ASAKURA, S ;
OOSAWA, F .
JOURNAL OF CHEMICAL PHYSICS, 1954, 22 (07) :1255-1256
[3]   Flocculation and percolation in reversible cluster-cluster aggregation [J].
Babu, S ;
Rottereau, M ;
Nicolai, T ;
Gimel, JC ;
Durand, D .
EUROPEAN PHYSICAL JOURNAL E, 2006, 19 (02) :203-211
[4]   RETRACTED: Computational design of a biologically active enzyme (Retracted article. See vol 319, pg 569, 2008) [J].
Dwyer, MA ;
Looger, LL ;
Hellinga, HW .
SCIENCE, 2004, 304 (5679) :1967-1971
[5]  
FISHER E., 1894, BER DTSCH CHEM GES, V27, P2985
[6]   How enzymes work: Analysis by modern rate theory and computer simulations [J].
Garcia-Viloca, M ;
Gao, J ;
Karplus, M ;
Truhlar, DG .
SCIENCE, 2004, 303 (5655) :186-195
[7]   A SIMPLE THEORY FOR THE FORCE BETWEEN SPHERES IMMERSED IN A FLUID [J].
HENDERSON, D ;
LOZADACASSOU, M .
JOURNAL OF COLLOID AND INTERFACE SCIENCE, 1986, 114 (01) :180-183
[8]   PHASE-BEHAVIOR OF A MODEL COLLOID-POLYMER MIXTURE [J].
ILETT, SM ;
ORROCK, A ;
POON, WCK ;
PUSEY, PN .
PHYSICAL REVIEW E, 1995, 51 (02) :1344-1352
[9]   Roles of entropic excluded-volume effects in colloidal and biological systems: Analyses using the three-dimensional integral equation theory [J].
Kinoshita, M .
CHEMICAL ENGINEERING SCIENCE, 2006, 61 (07) :2150-2160
[10]   Depletion effects on the lock and key steric interactions between macromolecules [J].
Kinoshita, M ;
Oguni, T .
CHEMICAL PHYSICS LETTERS, 2002, 351 (1-2) :79-84