A draft sequence of the rice genome (Oryza sativa L. ssp japonica)

被引：2380

作者：

Goff, SA

Ricke, D

Lan, TH

Presting, G

Wang, RL

Dunn, M

Glazebrook, J

Sessions, A

Oeller, P

Varma, H

Hadley, D

Hutchinson, D

Martin, C

Katagiri, F

Lange, BM

Moughamer, T

Xia, Y

Budworth, P

Zhong, JP

Miguel, T

Paszkowski, U

Zhang, SP

Colbert, M

Sun, WL

Chen, LL

Cooper, B

Park, S

Wood, TC

Mao, L

Quail, P

Wing, R

Dean, R

Yu, YS

Zharkikh, A

Shen, R

Sahasrabudhe, S

Thomas, A

Cannings, R

Gutin, A

Pruss, D

Reid, J

Tavtigian, S

Mitchell, J

Eldredge, G

Scholl, T

Miller, RM

Bhatnagar, S

Adey, N

Rubano, T

Tusneem, N

机构：

[1] Syngenta, Torrey Mesa Res Inst, San Diego, CA 92121 USA

[2] Bryan Coll, Dayton, TN 37321 USA

[3] No Illinois Univ, Dept Biol Sci, De Kalb, IL 60115 USA

[4] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

[5] Clemson Univ, Genome Inst, Clemson, SC 29630 USA

[6] Myriad Genet, Salt Lake City, UT 84108 USA

来源：

SCIENCE | 2002年 / 296卷 / 5565期

关键词：

D O I：

10.1126/science.1068275

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The genome of the japonica subspecies of rice, an important cereal and model monocot, was sequenced and assembled by whole-genome shotgun sequencing. The assembled sequence covers 93% of the 420-megabase genome. Gene predictions on the assembled sequence suggest that the genome contains 32,000 to 50,000 genes. Homologs of 98% of the known maize, wheat, and barley proteins are found in rice. Synteny and gene homology between rice and the other cereal genomes are extensive, whereas synteny with Arabidopsis is limited. Assignment of candidate rice orthologs to Arabidopsis genes is possible in many cases. The rice genome sequence provides a foundation for the improvement of cereals, our most important crops.

引用

页码：92 / 100

页数：9

共 94 条

[1] The genome sequence of Drosophila melanogaster [J].

Adams, MD ;

Celniker, SE ;

Holt, RA ;

Evans, CA ;

Gocayne, JD ;

Amanatides, PG ;

Scherer, SE ;

Li, PW ;

Hoskins, RA ;

Galle, RF ;

George, RA ;

Lewis, SE ;

Richards, S ;

Ashburner, M ;

Henderson, SN ;

Sutton, GG ;

Wortman, JR ;

Yandell, MD ;

Zhang, Q ;

Chen, LX ;

Brandon, RC ;

Rogers, YHC ;

Blazej, RG ;

Champe, M ;

Pfeiffer, BD ;

Wan, KH ;

Doyle, C ;

Baxter, EG ;

Helt, G ;

Nelson, CR ;

Miklos, GLG ;

Abril, JF ;

Agbayani, A ;

An, HJ ;

Andrews-Pfannkoch, C ;

Baldwin, D ;

Ballew, RM ;

Basu, A ;

Baxendale, J ;

Bayraktaroglu, L ;

Beasley, EM ;

Beeson, KY ;

Benos, PV ;

Berman, BP ;

Bhandari, D ;

Bolshakov, S ;

Borkova, D ;

Botchan, MR ;

Bouck, J ;

Brokstein, P .

SCIENCE, 2000, 287 (5461) :2185-2195

[2] Molecular and genetic analyses of the silky1 gene reveal conservation in floral organ specification between eudicots and monocots [J].

Ambrose, BA ;

Lerner, DR ;

Ciceri, P ;

Padilla, CM ;

Yanofsky, MF ;

Schmidt, RJ .

MOLECULAR CELL, 2000, 5 (03) :569-579

[3] InterPro - an integrated documentation resource for protein families, domains and functional sites [J].

Apweiler, R ;

Attwood, TK ;

Bairoch, A ;

Bateman, A ;

Birney, E ;

Biswas, M ;

Bucher, P ;

Cerutti, L ;

Corpet, F ;

Croning, MDR ;

Durbin, R ;

Falquet, L ;

Fleischmann, W ;

Gouzy, J ;

Hermjakob, H ;

Hulo, N ;

Jonassen, I ;

Kahn, D ;

Kanapin, A ;

Karavidopoulou, Y ;

Lopez, R ;

Marx, B ;

Mulder, NJ ;

Oinn, TM ;

Pagni, M ;

Servant, F ;

Sigrist, CJA ;

Zdobnov, EM .

BIOINFORMATICS, 2000, 16 (12) :1145-1150

[4] The InterPro database, an integrated documentation resource for protein families, domains and functional sites [J].

Apweiler, R ;

Attwood, TK ;

Bairoch, A ;

Bateman, A ;

Birney, E ;

Biswas, M ;

Bucher, P ;

Cerutti, T ;

Corpet, F ;

Croning, MDR ;

Durbin, R ;

Falquet, L ;

Fleischmann, W ;

Gouzy, J ;

Hermjakob, H ;

Hulo, N ;

Jonassen, I ;

Kahn, D ;

Kanapin, A ;

Karavidopoulou, Y ;

Lopez, R ;

Marx, B ;

Mulder, NJ ;

Oinn, TM ;

Pagni, M ;

Servant, F ;

Sigrist, CJA ;

Zdobnov, EM .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :37-40

[5] Analysis of the genome sequence of the flowering plant Arabidopsis thaliana [J].

Kaul, S ;

Koo, HL ;

Jenkins, J ;

Rizzo, M ;

Rooney, T ;

Tallon, LJ ;

Feldblyum, T ;

Nierman, W ;

Benito, MI ;

Lin, XY ;

Town, CD ;

Venter, JC ;

Fraser, CM ;

Tabata, S ;

Nakamura, Y ;

Kaneko, T ;

Sato, S ;

Asamizu, E ;

Kato, T ;

Kotani, H ;

Sasamoto, S ;

Ecker, JR ;

Theologis, A ;

Federspiel, NA ;

Palm, CJ ;

Osborne, BI ;

Shinn, P ;

Conway, AB ;

Vysotskaia, VS ;

Dewar, K ;

Conn, L ;

Lenz, CA ;

Kim, CJ ;

Hansen, NF ;

Liu, SX ;

Buehler, E ;

Altafi, H ;

Sakano, H ;

Dunn, P ;

Lam, B ;

Pham, PK ;

Chao, Q ;

Nguyen, M ;

Yu, GX ;

Chen, HM ;

Southwick, A ;

Lee, JM ;

Miranda, M ;

Toriumi, MJ ;

Davis, RW .

NATURE, 2000, 408 (6814) :796-815

[6] Transition from vegetative to reproductive phase [J].

Araki, T .

CURRENT OPINION IN PLANT BIOLOGY, 2001, 4 (01) :63-68

[7] The use of the Monsanto draft rice genome sequence in research [J].

Barry, GF .

PLANT PHYSIOLOGY, 2001, 125 (03) :1164-1165

[8]

Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]

[9] The unified grass genome: Synergy in synteny [J].

Bennetzen, JL ;

Freeling, M .

GENOME RESEARCH, 1997, 7 (04) :301-306

[10] Control of inflorescence architecture in Antirrhinum [J].

Bradley, D ;

Carpenter, R ;

Copsey, L ;

Vincent, C ;

Rothstein, S ;

Coen, E .

NATURE, 1996, 379 (6568) :791-797

← 1 2 3 4 5 6 7 8 9 10 →