Structural evidence for ammonia tunneling across the (βα)8 barrel of the imidazole glycerol phosphate synthase bienzyme complex

被引:99
作者
Douangamath, A
Walker, M
Beismann-Driemeyer, S
Vega-Fernandez, MC
Sterner, R
Wilmanns, M
机构
[1] DESY, EMBL Hamburg Outstn, D-22603 Hamburg, Germany
[2] Univ Cologne, Inst Biochem, D-50674 Cologne, Germany
关键词
bienzyme complex; glutamine amidotransferase; imidazole glycerol phosphate synthase; (beta alpha)(8) barrel; ammonia tunnel; X-ray structure;
D O I
10.1016/S0969-2126(02)00702-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Since reactive ammonia is not available under physiological conditions, glutamine is used as a source for the incorporation of nitrogen in a number of metabolic pathway intermediates. The heterodimeric ImGP synthase that links histidine and purine biosynthesis belongs to the family of glutamine amidotransferases in which the glutaminase activity is coupled with a subsequent synthase activity specific for each member of the enzyme family. Its X-ray structure from the hyperthermophile Thermotoga maritima shows that the glutaminase subunit is associated with the N-terminal face of the (betaalpha)(8) barrel cyclase subunit. The complex reveals a putative tunnel for the transfer of ammonia over a distance of 25 Angstrom. Although ammonia tunneling has been reported for glutamine amidotransferases, the ImGP synthase has evolved a novel mechanism, which extends the known functional properties of the versatile (betaalpha)(8) barrel fold.
引用
收藏
页码:185 / 193
页数:9
相关论文
共 40 条
[1]   Histidine biosynthetic pathway and genes: Structure, regulation, and evolution [J].
Alifano, P ;
Fani, R ;
Lio, P ;
Lazcano, A ;
Bazzicalupo, M ;
Carlomagno, MS ;
Bruni, CB .
MICROBIOLOGICAL REVIEWS, 1996, 60 (01) :44-+
[2]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[3]   Imidazole glycerol phosphate synthase from Thermotoga maritima -: Quaternary structure, steady-state kinetics, and reaction mechanism of the bienzyme complex [J].
Beismann-Driemeyer, S ;
Sterner, R .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (23) :20387-20396
[4]   Dual role for the glutamine phosphoribosylpyrophosphate amidotransferase ammonia channel - Interdomain signaling and intermediate channeling [J].
Bera, AK ;
Smith, JL ;
Zalkin, H .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (11) :7975-7979
[5]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[6]   Crystal structure of imidazole glycerol phosphate synthase:: A tunnel through a (β/α)8 barrel joins two active sites [J].
Chaudhuri, BN ;
Lange, SC ;
Myers, RS ;
Chittur, SV ;
Davisson, VJ ;
Smith, JL .
STRUCTURE, 2001, 9 (10) :987-997
[7]   Expression and purification of imidazole glycerol phosphate synthase from Saccharomyces cerevisiae [J].
Chittur, SV ;
Chen, Y ;
Davisson, VJ .
PROTEIN EXPRESSION AND PURIFICATION, 2000, 18 (03) :366-377
[8]   Homology among (βα)8 barrels:: Implications for the evolution of metabolic pathways [J].
Copley, RR ;
Bork, P .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 303 (04) :627-640
[9]   An extensively modified version of MolScript that includes greatly enhanced coloring capabilities [J].
Esnouf, RM .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1997, 15 (02) :132-+
[10]   Structural basis for the function of pyridoxine 5′-phosphate synthase [J].
Franco, MG ;
Laber, B ;
Huber, R ;
Clausen, T .
STRUCTURE, 2001, 9 (03) :245-253