Clinical Sequencing Defines the Genomic Landscape of Metastatic Colorectal Cancer

被引:711
作者
Yaeger, Rona [1 ]
Chatila, Walid K. [2 ]
Lipsyc, Marla D. [1 ]
Hechtman, Jaclyn F. [3 ]
Cercek, Andrea [1 ]
Sanchez-Vega, Francisco [2 ]
Jayakumaran, Gowtham [3 ]
Middha, Sumit [3 ]
Zehir, Ahmet [3 ]
Donoghue, Mark T. A.
You, Daoqi
Viale, Agnes
Kemeny, Nancy [1 ]
Segal, Neil H. [1 ]
Stadler, Zsofia K. [1 ]
Varghese, Anna M. [1 ]
Kundra, Ritika [2 ]
Gao, Jianjiong [2 ]
Syed, Aijazuddin [3 ]
Hyman, David M. [1 ]
Vakiani, Efsevia [3 ]
Rosen, Neal [1 ]
Taylor, Barry S. [2 ,4 ,5 ,6 ]
Ladanyi, Marc [3 ,6 ]
Berger, Michael F. [2 ,3 ,6 ]
Solit, David B. [1 ,2 ,6 ]
Shia, Jinru [3 ]
Saltz, Leonard [1 ]
Schultz, Nikolaus [2 ,4 ,5 ,6 ]
机构
[1] Mem Sloan Kettering Canc Ctr, Dept Med, New York, NY 10065 USA
[2] Mem Sloan Kettering Canc Ctr, Marie Josee & Henry R Kravis Ctr Mol Oncol, New York, NY 10065 USA
[3] Mem Sloan Kettering Canc Ctr, Dept Pathol, New York, NY 10065 USA
[4] Mem Sloan Kettering Canc Ctr, Dept Epidemiol, New York, NY 10065 USA
[5] Mem Sloan Kettering Canc Ctr, Dept Biostat, New York, NY 10065 USA
[6] Mem Sloan Kettering Canc Ctr, Human Oncol & Pathogenesis Program, New York, NY 10065 USA
关键词
MICROSATELLITE INSTABILITY; BRAF MUTANTS; MUTATION; DOMAIN; COLON;
D O I
10.1016/j.ccell.2017.12.004
中图分类号
R73 [肿瘤学];
学科分类号
100214 [肿瘤学];
摘要
Metastatic colorectal cancers (mCRCs) are clinically heterogeneous, but the genomic basis of this variability remains poorly understood. We performed prospective targeted sequencing of 1,134 CRCs. We identified splice alterations in intronic regions of APC and large in-frame deletions in CTNNB1, increasing oncogenic WNT pathway alterations to 96% of CRCs. Right-sided primary site in microsatellite stable mCRC was associated with shorter survival, older age at diagnosis, increased mutations, and enrichment of oncogenic alterations in KRAS, BRAF, PIK3CA, AKT1, RNF43, and SMAD4 compared with left-sided primaries. Left-sided tumors frequently had no identifiable genetic alteration in mitogenic signaling, but exhibited higher mitogenic ligand expression. Our results suggest different pathways to tumorigenesis in right-and left-sided microsatellite stable CRC that may underlie clinical differences.
引用
收藏
页码:125 / +
页数:15
相关论文
共 35 条
[1]
Signatures of mutational processes in human cancer [J].
Alexandrov, Ludmil B. ;
Nik-Zainal, Serena ;
Wedge, David C. ;
Aparicio, Samuel A. J. R. ;
Behjati, Sam ;
Biankin, Andrew V. ;
Bignell, Graham R. ;
Bolli, Niccolo ;
Borg, Ake ;
Borresen-Dale, Anne-Lise ;
Boyault, Sandrine ;
Burkhardt, Birgit ;
Butler, Adam P. ;
Caldas, Carlos ;
Davies, Helen R. ;
Desmedt, Christine ;
Eils, Roland ;
Eyfjord, Jorunn Erla ;
Foekens, John A. ;
Greaves, Mel ;
Hosoda, Fumie ;
Hutter, Barbara ;
Ilicic, Tomislav ;
Imbeaud, Sandrine ;
Imielinsk, Marcin ;
Jaeger, Natalie ;
Jones, David T. W. ;
Jones, David ;
Knappskog, Stian ;
Kool, Marcel ;
Lakhani, Sunil R. ;
Lopez-Otin, Carlos ;
Martin, Sancha ;
Munshi, Nikhil C. ;
Nakamura, Hiromi ;
Northcott, Paul A. ;
Pajic, Marina ;
Papaemmanuil, Elli ;
Paradiso, Angelo ;
Pearson, John V. ;
Puente, Xose S. ;
Raine, Keiran ;
Ramakrishna, Manasa ;
Richardson, Andrea L. ;
Richter, Julia ;
Rosenstiel, Philip ;
Schlesner, Matthias ;
Schumacher, Ton N. ;
Span, Paul N. ;
Teague, Jon W. .
NATURE, 2013, 500 (7463) :415-+
[2]
[Anonymous], JCO PRECISION ONCOL
[3]
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data [J].
Cerami, Ethan ;
Gao, Jianjiong ;
Dogrusoz, Ugur ;
Gross, Benjamin E. ;
Sumer, Selcuk Onur ;
Aksoy, Buelent Arman ;
Jacobsen, Anders ;
Byrne, Caitlin J. ;
Heuer, Michael L. ;
Larsson, Erik ;
Antipin, Yevgeniy ;
Reva, Boris ;
Goldberg, Arthur P. ;
Sander, Chris ;
Schultz, Nikolaus .
CANCER DISCOVERY, 2012, 2 (05) :401-404
[4]
Chakravarty D, 2017, JCO PRECIS ONCOL, V1
[5]
Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity [J].
Chang, Matthew T. ;
Asthana, Saurabh ;
Gao, Sizhi Paul ;
Lee, Byron H. ;
Chapman, Jocelyn S. ;
Kandoth, Cyriac ;
Gao, JianJiong ;
Socci, Nicholas D. ;
Solit, David B. ;
Olshen, Adam B. ;
Schultz, Nikolaus ;
Taylor, Barry S. .
NATURE BIOTECHNOLOGY, 2016, 34 (02) :155-+
[6]
Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT) A Hybridization Capture-Based Next-Generation Sequencing Clinical Assay for Solid Tumor Molecular Oncology [J].
Cheng, Donavan T. ;
Mitchell, Talia N. ;
Zehir, Ahmet ;
Shah, Ronak H. ;
Benayed, Ryma ;
Syed, Aijazuddin ;
Chandramohan, Raghu ;
Liu, Zhen Yu ;
Won, Helen H. ;
Scott, Sasinya N. ;
Brannon, A. Rose ;
O'Reilly, Catherine ;
Sadowska, Justyna ;
Casanova, Jacklyn ;
Yannes, Angela ;
Hechtman, Jaclyn F. ;
Yao, Jinjuan ;
Song, Wei ;
Ross, Dara S. ;
Oultache, Alifya ;
Dogan, Snjezana ;
Borsu, Laetitia ;
Hameed, Meera ;
Nafa, Khedoudja ;
Arcila, Maria E. ;
Ladanyi, Marc ;
Berger, Michael F. .
JOURNAL OF MOLECULAR DIAGNOSTICS, 2015, 17 (03) :251-264
[7]
DNA polymerase ? and exonuclease domain mutations in endometrial cancer [J].
Church, David N. ;
Briggs, Sarah E. W. ;
Palles, Claire ;
Domingo, Enric ;
Kearsey, Stephen J. ;
Grimes, Jonathon M. ;
Gorman, Maggie ;
Martin, Lynn ;
Howarth, Kimberley M. ;
Hodgson, Shirley V. ;
Kaur, Kulvinder ;
Taylor, Jenny ;
Tomlinson, Ian P. M. .
HUMAN MOLECULAR GENETICS, 2013, 22 (14) :2820-2828
[8]
MuSiC: Identifying mutational significance in cancer genomes [J].
Dees, Nathan D. ;
Zhang, Qunyuan ;
Kandoth, Cyriac ;
Wendl, Michael C. ;
Schierding, William ;
Koboldt, Daniel C. ;
Mooney, Thomas B. ;
Callaway, Matthew B. ;
Dooling, David ;
Mardis, Elaine R. ;
Wilson, Richard K. ;
Ding, Li .
GENOME RESEARCH, 2012, 22 (08) :1589-1598
[9]
Somatic POLE proofreading domain mutation, immune response, and prognosis in colorectal cancer: a retrospective, pooled biomarker study [J].
Domingo, Enric ;
Freeman-Mills, Luke ;
Rayner, Emily ;
Glaire, Mark ;
Briggs, Sarah ;
Vermeulen, Louis ;
Fessler, Evelyn ;
Medema, Jan Paul ;
Boot, Arnoud ;
Morreau, Hans ;
van Wezel, Tom ;
Liefers, Gerrit-Jan ;
Lothe, Ragnhild A. ;
Danielsen, Stine A. ;
Sveen, Anita ;
Nesbakken, Arild ;
Zlobec, Inti ;
Lugli, Alessandro ;
Koelzer, Viktor H. ;
Berger, Martin D. ;
Casteilvi-Bel, Sergi ;
Munoz, Jenifer ;
de Bruyn, Marco ;
Nijman, Hans W. ;
Novelli, Marco ;
Lawson, Kay ;
Oukrif, Dahtnane ;
Frangou, Eleni ;
Dutton, Peter ;
Tejpar, Sabine ;
Delorenzi, Mauro ;
Kerr, Rachel ;
Kerr, David ;
Tomlinson, Ian ;
Church, David N. .
LANCET GASTROENTEROLOGY & HEPATOLOGY, 2016, 1 (03) :207-216
[10]
MLH1-silenced and non-silenced subgroups of hypermutated colorectal carcinomas have distinct mutational landscapes [J].
Donehower, Lawrence A. ;
Creighton, Chad J. ;
Schultz, Nikolaus ;
Shinbrot, Eve ;
Chang, Kyle ;
Gunaratne, Preethi H. ;
Muzny, Donna ;
Sander, Chris ;
Hamilton, Stanley R. ;
Gibbs, Richard A. ;
Wheeler, David .
JOURNAL OF PATHOLOGY, 2013, 229 (01) :99-110