Draft genome sequence of the mulberry tree Morus notabilis

被引：274

作者：

He, Ningjia ^{[1
]}

Zhang, Chi ^{[2
]}

Qi, Xiwu ^{[1
]}

Zhao, Shancen ^{[2
]}

Tao, Yong ^{[2
]}

Yang, Guojun ^{[3
]}

Lee, Tae-Ho ^{[4
]}

Wang, Xiyin ^{[4
,5
]}

Cai, Qingle ^{[2
]}

Li, Dong ^{[1
,2
]}

Lu, Mengzhu ^{[6
]}

Liao, Sentai ^{[7
]}

Luo, Guoqing ^{[8
]}

He, Rongjun ^{[2
]}

Tan, Xu ^{[4
]}

Xu, Yunmin ^{[1
]}

Li, Tian ^{[1
]}

Zhao, Aichun ^{[1
]}

Jia, Ling ^{[1
]}

Fu, Qiang ^{[1
]}

Zeng, Qiwei ^{[1
]}

Gao, Chuan ^{[2
]}

Ma, Bi ^{[1
]}

Liang, Jiubo ^{[1
]}

Wang, Xiling ^{[1
]}

Shang, Jingzhe ^{[1
]}

Song, Penghua ^{[1
]}

Wu, Haiyang ^{[2
]}

Fan, Li ^{[1
]}

Wang, Qing ^{[1
]}

Shuai, Qin ^{[1
]}

Zhu, Juanjuan ^{[1
]}

Wei, Congjin ^{[1
]}

Zhu-Salzman, Keyan ^{[9
]}

Jin, Dianchuan ^{[5
]}

Wang, Jinpeng ^{[5
]}

Liu, Tao ^{[5
]}

Yu, Maode ^{[1
]}

Tang, Cuiming ^{[8
]}

Wang, Zhenjiang ^{[8
]}

Dai, Fanwei ^{[8
]}

Chen, Jiafei ^{[6
]}

Liu, Yan ^{[10
]}

Zhao, Shutang ^{[6
]}

Lin, Tianbao ^{[10
]}

Zhang, Shougong ^{[6
]}

Wang, Junyi ^{[2
]}

Wang, Jian ^{[2
]}

Yang, Huanming ^{[2
]}

Yang, Guangwei ^{[1
]}

机构：

[1] Southwest Univ, State Key Lab Silkworm Genome Biol, Chongqing 400715, Peoples R China

[2] BGI Shenzhen, Shenzhen 518083, Peoples R China

[3] Univ Toronto, Dept Biol, Mississauga, ON L5L 1C6, Canada

[4] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30605 USA

[5] Hebei United Univ, Sch Life Sci, Ctr Genom & Computat Biol, Tangshan 063009, Peoples R China

[6] Chinese Acad Forestry, Res Inst Forestry, State Key Lab Tree Genet & Breeding, Beijing 100091, Peoples R China

[7] Guangdong Acad Agr Sci, Guangzhou 510640, Guangdong, Peoples R China

[8] Guangdong Acad Agr Sci, Sericulture & Agri Food Res Inst, Guangzhou 510610, Guangdong, Peoples R China

[9] Texas A&M Univ, Dept Entomol, College Stn, TX 77843 USA

[10] Zhejiang Acad Agr Sci, Sericultural Res Inst, Hangzhou 310021, Zhejiang, Peoples R China

来源：

NATURE COMMUNICATIONS | 2013年 / 4卷

基金：

美国国家科学基金会;

关键词：

GENES; IDENTIFICATION; PROTEINASES; ARABIDOPSIS; EXPRESSION; RESISTANCE; PHYLOGENY; PROVIDES; PROGRAM; SYSTEM;

D O I：

10.1038/ncomms3445

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Human utilization of the mulberry-silkworm interaction started at least 5,000 years ago and greatly influenced world history through the Silk Road. Complementing the silkworm genome sequence, here we describe the genome of a mulberry species Morus notabilis. In the 330-Mb genome assembly, we identify 128Mb of repetitive sequences and 29,338 genes, 60.8% of which are supported by transcriptome sequencing. Mulberry gene sequences appear to evolve similar to 3 times faster than other Rosales, perhaps facilitating the species' spread worldwide. The mulberry tree is among a few eudicots but several Rosales that have not preserved genome duplications in more than 100 million years; however, a neopolyploid series found in the mulberry tree and several others suggest that new duplications may confer benefits. Five predicted mulberry miRNAs are found in the haemolymph and silk glands of the silkworm, suggesting interactions at molecular levels in the plant-herbivore relationship. The identification and analyses of mulberry genes involved in diversifying selection, resistance and protease inhibitor expressed in the laticifers will accelerate the improvement of mulberry plants.

引用

页数：9

共 59 条

[1]

Janaki Ammal E. K., 1948, Journal of the Royal Horticultural Society, V73, P117

[2] Aspartic proteinases are expressed in pitchers of the carnivorous plant Nepenthes alata Blanco [J].

An, CI ;

Fukusaki, E ;

Kobayashi, A .

PLANTA, 2002, 214 (05) :661-667

[3]

[Anonymous], 2004, RepeatMasker Open-3.0 [Internet]

[4] SUGARS WITH NITROGEN IN THE RING ISOLATED FROM THE LEAVES OF MORUS-BOMBYCIS [J].

ASANO, N ;

TOMIOKA, E ;

KIZU, H ;

MATSUI, K .

CARBOHYDRATE RESEARCH, 1994, 253 :235-245

[5]

Barber ElizabethJ. B., 1991, Prehistoric Textiles: The development of Cloth in the Neolithic and Bronze Ages, with special Reference to the Aegean

[6] Structural basis of the resistance of an insect carboxypeptidase to plant protease inhibitors [J].

Bayés, A ;

Comellas-Bigler, M ;

de la Vega, MR ;

Maskos, K ;

Bode, W ;

Aviles, FX ;

Jongsma, MA ;

Beekwilder, J ;

Vendrell, J .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (46) :16602-16607

[7] Tandem repeats finder: a program to analyze DNA sequences [J].

Benson, G .

NUCLEIC ACIDS RESEARCH, 1999, 27 (02) :573-580

[8] GeneWise and genomewise [J].

Birney, E ;

Clamp, M ;

Durbin, R .

GENOME RESEARCH, 2004, 14 (05) :988-995

[9]

Byng JW, 2016, BOT J LINN SOC, V181, P1, DOI [10.1111/boj.12385, 10.1111/j.1095-8339.2009.00996.x]

[10] Morphological Evolution in the Mulberry Family (Moraceae) [J].

Clement, Wendy L. ;

Weiblen, George D. .

SYSTEMATIC BOTANY, 2009, 34 (03) :530-552

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