Sequence heterogeneity and the dynamics of molecular motors

被引:13
作者
Kafri, Y
Nelson, DR
机构
[1] Inst Curie, Sect Rech, CNRS, UMR168, F-75248 Paris 05, France
[2] Harvard Univ, Dept Phys, Cambridge, MA 02138 USA
基金
美国国家科学基金会;
关键词
D O I
10.1088/0953-8984/17/47/016
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
The effect of sequence heterogeneity on the dynamics of molecular motors is reviewed and analysed using a set of recently introduced lattice models. First, we review results for the influence of heterogeneous tracks such as a single strand of DNA or RNA on the dynamics of the motors. We stress how the predicted behaviour might be observed experimentally in anomalous drift and diffusion of motors over a wide range of parameters near the stall force and discuss the extreme limit of strongly biased motors with one-way hopping. We then consider the dynamics in an environment containing a variety of different fuels which supply chemical energy for the motor motion, either on a heterogeneous or on a periodic track. The results for motion along a periodic track are relevant to kinesin motors in a solution with a mixture of different nucleotide triphosphate fuel sources.
引用
收藏
页码:S3871 / S3886
页数:16
相关论文
共 42 条
[1]  
AJDARI A, 1994, J PHYS I, V4, P1551, DOI 10.1051/jp1:1994206
[2]   TRANSPORT BY ACTIVE FILAMENTS [J].
AJDARI, A .
EUROPHYSICS LETTERS, 1995, 31 (02) :69-74
[3]  
[Anonymous], 2001, MECH MOTOR PROTEINS
[4]   Sequence-dependent kinetic model for transcription elongation by RNA polymerase [J].
Bai, L ;
Shundrovsky, A ;
Wang, MD .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 344 (02) :335-349
[5]   PERIODICALLY ROCKED THERMAL RATCHETS [J].
BARTUSSEK, R ;
HANGGI, P ;
KISSNER, JG .
EUROPHYSICS LETTERS, 1994, 28 (07) :459-464
[6]   Precise numerics versus theory for correlation ratchets [J].
Bartussek, R ;
Reimann, P ;
Hanggi, P .
PHYSICAL REVIEW LETTERS, 1996, 76 (07) :1166-1169
[7]   Processive translocation and DNA unwinding by individual RecBCD enzyme molecules [J].
Bianco, PR ;
Brewer, LR ;
Corzett, M ;
Balhorn, R ;
Yeh, Y ;
Kowalczykowski, SC ;
Baskin, RJ .
NATURE, 2001, 409 (6818) :374-378
[8]   CLASSICAL DIFFUSION OF A PARTICLE IN A ONE-DIMENSIONAL RANDOM FORCE-FIELD [J].
BOUCHAUD, JP ;
COMTET, A ;
GEORGES, A ;
LEDOUSSAL, P .
ANNALS OF PHYSICS, 1990, 201 (02) :285-341
[9]   Ten years of tension: single-molecule DNA mechanics [J].
Bustamante, C ;
Bryant, Z ;
Smith, SB .
NATURE, 2003, 421 (6921) :423-427
[10]   Grabbing the cat by the tail: manipulating molecules one by one [J].
Bustamante C. ;
Macosko J.C. ;
Wuite G.J.L. .
Nature Reviews Molecular Cell Biology, 2000, 1 (2) :130-136