Rapid detection of Macrobrachium rosenbergii nodavirus (MrNV) and extra small virus (XSV), the pathogenic agents of white tail disease of Macrobrachium rosenbergii (De Man), by loop-mediated isothermal amplification

被引:64
作者
Pillai, D
Bonami, JR
Widada, JS
机构
[1] Univ Montpellier 2, CNRS, UMR 5119, F-34095 Montpellier 5, France
[2] Kerala Agr Univ, Coll Fisheries, Dept Aquaculture, Cochin, Kerala, India
关键词
diagnosis; extra small virus (XSV); loop-mediated isothermal amplification (LAMP); Macrobrachium rosenbergii; white tail disease; M. rosenbergii nodavirus (MrNV);
D O I
10.1111/j.1365-2761.2006.00718.x
中图分类号
S9 [水产、渔业];
学科分类号
0908 ;
摘要
A loop-mediated isothermal amplification (LAMP) procedure is described for rapid diagnosis of white tail disease, a viral disease caused by Macrobrachium rosenbergii nodavirus (MrNV) and extra small virus (XSV), in the giant freshwater prawn, Macrobrachium rosenbergii. This method was more sensitive than conventional RT-PCR for detecting the two viruses. A set of four primers, two outer and two inner, were designed for MrNV detection. An additional pair of loop primers was also used in an accelerated LAMP reaction for detection of XSV. Time and temperature conditions were optimized for detection of the two viruses. The LAMP reaction is highly suited for disease diagnosis in developing countries as amplification of DNA can be detected without the use of agarose gel electrophoresis, by the production of whitish precipitate of magnesium pyrophosphate as a by-product.
引用
收藏
页码:275 / 283
页数:9
相关论文
共 17 条
[1]   White tail disease of the giant freshwater prawn, Macrobrachium rosenbergii:: separation of the associated virions and characterization of MrNV as a new type of nodavirus [J].
Bonami, JR ;
Shi, Z ;
Qian, D ;
Sri Widada, J .
JOURNAL OF FISH DISEASES, 2005, 28 (01) :23-31
[2]   Rapid detection of a fish iridovirus using loop-mediated isothermal amplification (LAMP) [J].
Caipang, CMA ;
Haraguchi, I ;
Ohira, T ;
Hirono, I ;
Aoki, T .
JOURNAL OF VIROLOGICAL METHODS, 2004, 121 (02) :155-161
[3]   Development of immunocapture reverse transcription loop-mediated isothermal amplification for the detection of tomato spotted wilt virus from chrysanthemum [J].
Fukuta, S ;
Ohishi, K ;
Yoshida, K ;
Mizukami, Y ;
Ishida, A ;
Kanbe, M .
JOURNAL OF VIROLOGICAL METHODS, 2004, 121 (01) :49-55
[4]   Detection of koi herpesvirus in common carp, Cyprinus carpio L., by loop-mediated isothermal amplification [J].
Gunimaladevi, I ;
Kono, T ;
Venugopal, MN ;
Sakai, M .
JOURNAL OF FISH DISEASES, 2004, 27 (10) :583-589
[5]   Studies on the occurrence of Macrobrachium rosenbergii nodavirus and extra small virus-like particles associated with white tail disease of M-rosenbergii in India by RT-PCR detection [J].
Hameed, ASS ;
Yoganandhan, K ;
Widada, JS ;
Bonami, JR .
AQUACULTURE, 2004, 238 (1-4) :127-133
[6]   Detection of white spot syndrome virus in shrimp by loop-mediated isothermal amplification [J].
Kono, T ;
Savan, R ;
Sakai, M ;
Itami, T .
JOURNAL OF VIROLOGICAL METHODS, 2004, 115 (01) :59-65
[7]   Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation [J].
Mori, Y ;
Nagamine, K ;
Tomita, N ;
Notomi, T .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2001, 289 (01) :150-154
[8]   Accelerated reaction by loop-mediated isothermal amplification using loop primers [J].
Nagamine, K ;
Hase, T ;
Notomi, T .
MOLECULAR AND CELLULAR PROBES, 2002, 16 (03) :223-229
[9]   Loop-mediated isothermal amplification of DNA [J].
Notomi, Tsugunori ;
Okayama, Hiroto ;
Masubuchi, Harumi ;
Yonekawa, Toshihiro ;
Watanabe, Keiko ;
Amino, Nobuyuki ;
Hase, Tetsu .
NUCLEIC ACIDS RESEARCH, 2000, 28 (12)
[10]   Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus [J].
Parida, M ;
Posadas, G ;
Inoue, S ;
Hasebe, F ;
Morita, K .
JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (01) :257-263