Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology

被引:367
作者
Koeser, Claudio U. [1 ,2 ]
Ellington, Matthew J. [2 ]
Cartwright, Edward J. P. [1 ,2 ]
Gillespie, Stephen H. [3 ]
Brown, Nicholas M. [2 ]
Farrington, Mark [2 ]
Holden, Matthew T. G. [4 ]
Dougan, Gordon [4 ]
Bentley, Stephen D. [4 ]
Parkhill, Julian [4 ]
Peacock, Sharon J. [1 ,2 ,4 ,5 ]
机构
[1] Univ Cambridge, Addenbrookes Hosp, Dept Med, Cambridge CB2 2QQ, England
[2] Addenbrookes Hosp, Clin Microbiol & Publ Hlth Lab, Hlth Protect Agcy Microbiol Serv, Cambridge, England
[3] Univ St Andrews, Sch Med, St Andrews, Fife, Scotland
[4] Wellcome Trust Sanger Inst, Cambridge, England
[5] Univ Cambridge, Dept Pathol, Cambridge CB2 1QP, England
基金
英国生物技术与生命科学研究理事会; 英国惠康基金; 英国医学研究理事会;
关键词
RESISTANT STAPHYLOCOCCUS-AUREUS; MYCOBACTERIUM-TUBERCULOSIS COMPLEX; MONOMORPHIC BACTERIAL PATHOGENS; DRUG-RESISTANCE; COLI O104/H4; POLYMORPHISM ANALYSIS; INFECTIOUS-DISEASES; HIV-1; TROPISM; EVOLUTION; OUTBREAK;
D O I
10.1371/journal.ppat.1002824
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
引用
收藏
页数:9
相关论文
共 118 条
[1]   The multilocus sequence typing network: mlst.net [J].
Aanensen, DM ;
Spratt, BG .
NUCLEIC ACIDS RESEARCH, 2005, 33 :W728-W733
[2]   Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens [J].
Achtman, Mark .
ANNUAL REVIEW OF MICROBIOLOGY, 2008, 62 :53-70
[3]   Insights from genomic comparisons of genetically monomorphic bacterial pathogens [J].
Achtman, Mark .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2012, 367 (1590) :860-867
[4]   Escherichia coli O104:H4 Infections and International Travel [J].
Alexander, David C. ;
Hao, Weilong ;
Gilmour, Matthew W. ;
Zittermann, Sandra ;
Sarabia, Alicia ;
Melano, Roberto G. ;
Peralta, Analyn ;
Lombos, Marina ;
Warren, Keisha ;
Amatnieks, Yuri ;
Virey, Evangeline ;
Ma, Jennifer H. ;
Jamieson, Frances B. ;
Low, Donald E. ;
Allen, Vanessa G. .
EMERGING INFECTIOUS DISEASES, 2012, 18 (03) :473-476
[5]   High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach [J].
Allard, Marc W. ;
Luo, Yan ;
Strain, Errol ;
Li, Cong ;
Keys, Christine E. ;
Son, Insook ;
Stones, Robert ;
Musser, Steven M. ;
Brown, Eric W. .
BMC GENOMICS, 2012, 13
[6]   Rapid MRSA test in exposed persons: Costs and savings in hospitals [J].
Andersen, B. M. ;
Tollefsen, T. ;
Seljordslia, B. ;
Hochlin, K. ;
Syversen, G. ;
Jonassen, T. O. ;
Rasch, M. ;
Sandvik, L. .
JOURNAL OF INFECTION, 2010, 60 (04) :293-299
[7]   GENOME WATCH Attack of the clones [J].
Baldry, Susannah .
NATURE REVIEWS MICROBIOLOGY, 2010, 8 (06) :390-390
[8]   The influenza virus resource at the national center for biotechnology information [J].
Bao, Yiming ;
Bolotov, Pavel ;
Dernovoy, Dmitry ;
Kiryutin, Boris ;
Zaslavsky, Leonid ;
Tatusova, Tatiana ;
Ostell, Jim ;
Lipman, David .
JOURNAL OF VIROLOGY, 2008, 82 (02) :596-601
[9]   Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics [J].
Beres, Stephen B. ;
Carroll, Ronan K. ;
Shea, Patrick R. ;
Sitkiewicz, Izabela ;
Martinez-Gutierrez, Juan Carlos ;
Low, Donald E. ;
McGeer, Allison ;
Willey, Barbara M. ;
Green, Karen ;
Tyrrell, Gregory J. ;
Goldman, Thomas D. ;
Feldgarden, Michael ;
Birren, Bruce W. ;
Fofanov, Yuriy ;
Boos, John ;
Wheaton, William D. ;
Honisch, Christiane ;
Musser, James M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (09) :4371-4376
[10]  
Bifani P, 2009, METHODS MOL BIOL, V551, P173, DOI 10.1007/978-1-60327-999-4_14