Use of a rapid reverse-transcription recombinase aided amplification assay for respiratory syncytial virus detection

被引:92
作者
Chen, Chen [1 ]
Li, Xin-na [1 ]
Li, Gui-xia [2 ]
Zhao, Li [1 ,2 ]
Duan, Su-xia [1 ,2 ]
Yan, Teng-fei [1 ,3 ]
Feng, Zhi-shan [2 ]
Ma, Xue-jun [1 ]
机构
[1] Natl Inst Viral Dis Control & Prevent, Chinese Ctr Dis Control & Prevent, Key Lab Med Virol Natl Hlth & Family Planning Com, Beijing, Peoples R China
[2] Childrens Hosp Hebei Prov, Pediat Res Inst, Shijiazhuang 050031, Hebei, Peoples R China
[3] First Hosp Shijiazhuang, Myasthenia Gravis Res Inst, Shijiazhuang 050011, Hebei, Peoples R China
关键词
Respiratory syncytial virus; Detection; Subgroup; RT-RAA; MEDIATED ISOTHERMAL AMPLIFICATION; REAL-TIME PCR; VIRAL CULTURE; INFECTION; ADULTS; DIAGNOSIS; PREVALENCE; COMMUNITY; ILLNESS; SEASONS;
D O I
10.1016/j.diagmicrobio.2017.10.005
中图分类号
R51 [传染病];
学科分类号
100201 [内科学];
摘要
In this study, a rapid reverse-transcription recombinase aided amplification (RT-RAA) assay was developed to detect respiratory syncytial virus (RSV) subgroups A and B, respectively. The reaction was performed at 39 C in less than 30 min. The analytical sensitivities of RSVA and RSVB at 95% probability by probit regression analysis were 38copies per reaction and 35 copies per reaction, respectively, and no cross reactions with other related respiratory viruses were observed. The RT-RAA assay was further utilized to detect and subgroup 306 clinical specimens and the results showed that 79(25.82%, 79/306) samples were positive for RSV, of those 16(20.25%, 16/79) were identified as RSVA and 63(79.75%, 63/79) were RSVB, which is completely consistent with the results obtained by RSV RT-qPCR assay. In conclusion, the developed RAA assay will be of benefit as a faster, sensitive and specific alternative tool for detection of RSV. (C) 2017 Elsevier Inc. All rights reserved.
引用
收藏
页码:90 / 95
页数:6
相关论文
共 35 条
[1]
AN EPIDEMIC OF RESPIRATORY SYNCYTIAL VIRUS IN ELDERLY PEOPLE - CLINICAL AND SEROLOGICAL FINDINGS [J].
AGIUS, G ;
DINDINAUD, G ;
BIGGAR, RJ ;
PEYRE, R ;
VAILLANT, V ;
RANGER, S ;
POUPET, JY ;
CISSE, MF ;
CASTETS, M .
JOURNAL OF MEDICAL VIROLOGY, 1990, 30 (02) :117-127
[2]
ANTIGENIC CHARACTERIZATION OF RESPIRATORY SYNCYTIAL VIRUS-STRAINS WITH MONOCLONAL-ANTIBODIES [J].
ANDERSON, LJ ;
HIERHOLZER, JC ;
TSOU, C ;
HENDRY, RM ;
FERNIE, BF ;
STONE, Y ;
MCINTOSH, K .
JOURNAL OF INFECTIOUS DISEASES, 1985, 151 (04) :626-633
[3]
Use of a multiplex real-time PCR to study the incidence of human metapneumovirus and human respiratory syncytial virus infections during two winter seasons in a Belgian paediatric hospital [J].
Bonroy, C. ;
Vankeerberghen, A. ;
Boel, A. ;
De Beenhouwer, H. .
CLINICAL MICROBIOLOGY AND INFECTION, 2007, 13 (05) :504-509
[4]
Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures [J].
Chen, Zhucheng ;
Yang, Haijuan ;
Pavletich, Nikola P. .
NATURE, 2008, 453 (7194) :489-U3
[5]
Genetic variability among group A and group B respiratory syncytial viruses in a children's hospital [J].
Coggins, WB ;
Lefkowitz, EJ ;
Sullender, WM .
JOURNAL OF CLINICAL MICROBIOLOGY, 1998, 36 (12) :3552-3557
[6]
Raid and highly sensitive qualitative real-time assay for detection of respiratory syncytial virus A and B using NASBA and molecular beacon technology [J].
Deiman, B. ;
Schrover, C. ;
Moore, C. ;
Westmoreland, D. ;
van de Wiel, P. .
JOURNAL OF VIROLOGICAL METHODS, 2007, 146 (1-2) :29-35
[7]
Respiratory syncytial virus is an important cause of community-acquired lower respiratory infection among hospitalized adults [J].
Dowell, SF ;
Anderson, LJ ;
Gary, HE ;
Erdman, DD ;
Plouffe, JF ;
File, TM ;
Marston, BJ ;
Breiman, RF .
JOURNAL OF INFECTIOUS DISEASES, 1996, 174 (03) :456-462
[8]
RESPIRATORY SYNCYTIAL VIRUS-INFECTION IN IMMUNOCOMPROMISED ADULTS [J].
ENGLUND, JA ;
SULLIVAN, CJ ;
JORDAN, MC ;
DEHNER, LP ;
VERCELLOTTI, GM ;
BALFOUR, HH .
ANNALS OF INTERNAL MEDICINE, 1988, 109 (03) :203-208
[9]
Comparison of quantitative reverse transcription-PCR to viral culture for assessment of respiratory syncytial virus shedding [J].
Falsey, AR ;
Formica, MA ;
Treanor, JJ ;
Walsh, EE .
JOURNAL OF CLINICAL MICROBIOLOGY, 2003, 41 (09) :4160-4165
[10]
RESPIRATORY SYNCYTIAL VIRUS AND INFLUENZA-A INFECTIONS IN THE HOSPITALIZED ELDERLY [J].
FALSEY, AR ;
CUNNINGHAM, CK ;
BARKER, WH ;
KOUIDES, RW ;
YUEN, JB ;
MENEGUS, M ;
WEINER, LB ;
BONVILLE, CA ;
BETTS, RF .
JOURNAL OF INFECTIOUS DISEASES, 1995, 172 (02) :389-394