Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development

被引:210
作者
Xu, Yufei [2 ]
Xu, Chao [1 ,3 ]
Kato, Akiko [4 ]
Tempel, Wolfram [1 ,3 ]
Abreu, Jose Garcia [5 ]
Bian, Chuanbing [1 ,3 ]
Hu, Yeguang [2 ]
Hu, Di [2 ,6 ]
Zhao, Bin [6 ]
Cerovina, Tanja [1 ,3 ]
Diao, Jianbo [6 ]
Wu, Feizhen [6 ]
He, Housheng Hansen [7 ,8 ]
Cui, Qingyan [9 ]
Clark, Erin [2 ]
Ma, Chun [2 ,6 ]
Barbara, Andrew [2 ]
Veenstra, Gert Jan C. [10 ]
Xu, Guoliang [9 ]
Kaiser, Ursula B. [2 ]
Liu, X. Shirley [7 ,8 ,11 ]
Sugrue, Stephen P. [12 ]
He, Xi [5 ]
Min, Jinrong [1 ,3 ]
Kato, Yoichi [4 ]
Shi, Yujiang Geno [2 ]
机构
[1] Univ Toronto, Struct Genom Consortium, Toronto, ON M5G 1L7, Canada
[2] Harvard Univ, Sch Med, Brigham & Womens Hosp, Div Endocrinol Diabet & Hypertens,Dept Med, Boston, MA 02115 USA
[3] Univ Toronto, Dept Physiol, Toronto, ON M5G 1L7, Canada
[4] Florida State Univ, Coll Med, Dept Biomed Sci, Tallahassee, FL 32306 USA
[5] Harvard Univ, Sch Med, Boston Childrens Hosp, FM Kirby Neurobiol Ctr, Boston, MA 02115 USA
[6] Fudan Univ, Inst Biomed Sci, Lab Epigenet, Shanghai 200032, Peoples R China
[7] Dana Farber Canc Inst, Dept Biostat & Computat Biol, Boston, MA 02115 USA
[8] Harvard Univ, Sch Publ Hlth, Boston, MA 02115 USA
[9] Chinese Acad Sci, Shanghai Inst Biol Sci, Inst Biochem & Cell Biol, State Key Lab Mol Biol, Shanghai 200031, Peoples R China
[10] Radboud Univ Nijmegen, Nijmegen Ctr Mol Life Sci, NL-6500 HB Nijmegen, Netherlands
[11] Dana Farber Canc Inst, Ctr Funct Canc Epigenet, Boston, MA 02215 USA
[12] Univ Florida, Dept Anat & Cell Biol, Gainesville, FL 32610 USA
基金
英国惠康基金;
关键词
EMBRYONIC STEM-CELLS; DNA METHYLATION; MAMMALIAN DNA; SELF-RENEWAL; 5-HYDROXYMETHYLCYTOSINE; MOUSE; 5-METHYLCYTOSINE; PROTEINS; GENOME; 5-CARBOXYLCYTOSINE;
D O I
10.1016/j.cell.2012.11.014
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ten-Eleven Translocation (Tet) family of dioxygenases dynamically regulates DNA methylation and has been implicated in cell lineage differentiation and oncogenesis. Yet their functions and mechanisms of action in gene regulation and embryonic development are largely unknown. Here, we report that Xenopus Tet3 plays an essential role in early eye and neural development by directly regulating a set of key developmental genes. Tet3 is an active 5mC hydroxylase regulating the 5mC/5hmC status at target gene promoters. Biochemical and structural studies further demonstrate that the Tet3 CXXC domain is critical for specific Tet3 targeting. Finally, we show that the enzymatic activity and CXXC domain are both crucial for Tet3's biological function. Together, these findings define Tet3 as a transcription regulator and reveal a molecular mechanism by which the 5mC hydroxylase and DNA binding activities of Tet3 cooperate to control target gene expression and embryonic development.
引用
收藏
页码:1200 / 1213
页数:14
相关论文
共 30 条
[1]   Solution structure of the nonmethyl-CpG-binding CXXC domain of the leukaemia-associated MLL histone methyltransferase [J].
Allen, Mark D. ;
Grummitt, Charles G. ;
Hilcenko, Christine ;
Min, Sandra Young ;
Tonkin, Louise M. ;
Johnson, Christopher M. ;
Freund, Stefan M. ;
Bycroft, Mark ;
Warren, Alan J. .
EMBO JOURNAL, 2006, 25 (19) :4503-4512
[2]   CYTOSINE METHYLATION - THE PROS AND CONS OF DNA METHYLATION [J].
BESTOR, TH ;
COXON, A .
CURRENT BIOLOGY, 1993, 3 (06) :384-386
[3]   CPG-RICH ISLANDS AND THE FUNCTION OF DNA METHYLATION [J].
BIRD, AP .
NATURE, 1986, 321 (6067) :209-213
[4]   Uncovering the role of 5-hydroxymethylcytosine in the epigenome [J].
Branco, Miguel R. ;
Ficz, Gabriella ;
Reik, Wolf .
NATURE REVIEWS GENETICS, 2012, 13 (01) :7-13
[5]   Mutation in TET2 in Myeloid Cancers [J].
Delhommeau, Francois ;
Dupont, Sabrina ;
Della Valle, Veronique ;
James, Chloe ;
Trannoy, Severine ;
Masse, Aline ;
Kosmider, Olivier ;
Le Couedic, Jean-Pierre ;
Robert, Fabienne ;
Alberdi, Antonio ;
Lecluse, Yann ;
Plo, Isabelle ;
Dreyfus, Francois J. ;
Marzac, Christophe ;
Casadevall, Nicole ;
Lacombe, Catherine ;
Romana, Serge P. ;
Dessen, Philippe ;
Soulier, Jean ;
Viguie, Franck ;
Fontenay, Michaela ;
Vainchenker, William ;
Bernard, Olivier A. .
NEW ENGLAND JOURNAL OF MEDICINE, 2009, 360 (22) :2289-2301
[6]   Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation [J].
Ficz, Gabriella ;
Branco, Miguel R. ;
Seisenberger, Stefanie ;
Santos, Fatima ;
Krueger, Felix ;
Hore, Timothy A. ;
Marques, C. Joana ;
Andrews, Simon ;
Reik, Wolf .
NATURE, 2011, 473 (7347) :398-U589
[7]   Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates [J].
Globisch, Daniel ;
Muenzel, Martin ;
Mueller, Markus ;
Michalakis, Stylianos ;
Wagner, Mirko ;
Koch, Susanne ;
Brueckl, Tobias ;
Biel, Martin ;
Carell, Thomas .
PLOS ONE, 2010, 5 (12)
[8]   The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes [J].
Gu, Tian-Peng ;
Guo, Fan ;
Yang, Hui ;
Wu, Hai-Ping ;
Xu, Gui-Fang ;
Liu, Wei ;
Xie, Zhi-Guo ;
Shi, Linyu ;
He, Xinyi ;
Jin, Seung-gi ;
Iqbal, Khursheed ;
Shi, Yujiang Geno ;
Deng, Zixin ;
Szabo, Piroska E. ;
Pfeifer, Gerd P. ;
Li, Jinsong ;
Xu, Guo-Liang .
NATURE, 2011, 477 (7366) :606-U136
[9]   Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA [J].
He, Yu-Fei ;
Li, Bin-Zhong ;
Li, Zheng ;
Liu, Peng ;
Wang, Yang ;
Tang, Qingyu ;
Ding, Jianping ;
Jia, Yingying ;
Chen, Zhangcheng ;
Li, Lin ;
Sun, Yan ;
Li, Xiuxue ;
Dai, Qing ;
Song, Chun-Xiao ;
Zhang, Kangling ;
He, Chuan ;
Xu, Guo-Liang .
SCIENCE, 2011, 333 (6047) :1303-1307
[10]   TET1 Suppresses Cancer Invasion by Activating the Tissue Inhibitors of Metalloproteinases [J].
Hsu, Chih-Hung ;
Peng, Kai-Lin ;
Kang, Ming-Lun ;
Chen, Yi-Ren ;
Yang, Yu-Chih ;
Tsai, Chin-Hsien ;
Chu, Chi-Shuen ;
Jeng, Yung-Ming ;
Chen, Yen-Ting ;
Lin, Feng-Mao ;
Huang, Hsien-Da ;
Lu, Yun-Yuh ;
Teng, Yu-Ching ;
Lin, Shinn-Tsuen ;
Lin, Ruo-Kai ;
Tang, Fan-Mei ;
Lee, Sung-Bau ;
Hsu, Huan Ming ;
Yu, Jyh-Cherng ;
Hsiao, Pei-Wen ;
Juan, Li-Jung .
CELL REPORTS, 2012, 2 (03) :568-579