A Comprehensive Mathematical Model for Three-Body Binding Equilibria

被引:296
作者
Douglass, Eugene F., Jr. [1 ]
Miller, Chad J. [2 ]
Sparer, Gerson [3 ]
Shapiro, Harold [4 ]
Spiegel, David A. [1 ,2 ]
机构
[1] Yale Univ, Dept Chem, New Haven, CT 06520 USA
[2] Yale Univ, Dept Pharmacol, New Haven, CT 06520 USA
[3] Pratt Inst, Dept Math, Brooklyn, NY 11205 USA
[4] NYU, Courant Inst Math Sci, New York, NY 10012 USA
基金
美国国家卫生研究院;
关键词
MONOCLONAL-ANTIBODIES; COMPETITIVE-BINDING; TERNARY COMPLEX; CELL-SURFACE; HEPARIN; SUPERANTIGEN; MECHANISM; THROMBIN; PROSTATE; LIGANDS;
D O I
10.1021/ja311795d
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Three-component systems are often more complex than their two-component counterparts. Although the reversible association of three components in solution is critical for a vast array of chemical and biological processes, no general physical picture of such systems has emerged. Here we have developed a general, comprehensive framework for understanding ternary complex equilibria, which relates directly to familiar concepts such as EC50 and IC50 from simpler (binary complex) equilibria. Importantly, application of our model to data from the published literature has enabled us to achieve new insights into complex systems ranging from coagulation to therapeutic dosing regimens for monoclonal antibodies. We also provide an Excel spreadsheet to assist readers in both conceptualizing and applying our models. Overall, our analysis has the potential to render complex three-component systems-which have previously been characterized as "analytically intractable"-readily comprehensible to theoreticians and experimentalists alike.
引用
收藏
页码:6092 / 6099
页数:8
相关论文
共 42 条
[1]   Quantifying the energetics of cooperativity in a ternary protein complex [J].
Andersen, PS ;
Schuck, P ;
Sundberg, EJ ;
Geisler, C ;
Karjalainen, K ;
Mariuzza, RA .
BIOCHEMISTRY, 2002, 41 (16) :5177-5184
[2]   Statistical mechanical approach to competitive binding of metal ions to multi-center receptors [J].
Borkovec, M ;
Hamácek, J ;
Piguet, C .
DALTON TRANSACTIONS, 2004, (24) :4096-4105
[3]   Quantitative analyses of bifunctional molecules [J].
Braun, PD ;
Wandless, TJ .
BIOCHEMISTRY, 2004, 43 (18) :5406-5413
[4]   Computer-based analysis of the binding steps in protein complex formation [J].
Bray, D ;
Lay, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (25) :13493-13498
[5]   Antibody-Dependent Cell-Mediated Cytotoxicity Effector-Enhanced EphA2 Agonist Monoclonal Antibody Demonstrates Potent Activity against Human Tumors [J].
Bruckheimer, Elizabeth M. ;
Fazenbaker, Christine A. ;
Gallagher, Sandra ;
Mulgrew, Kathy ;
Fuhrmann, Stacy ;
Coffman, Karen T. ;
Walsh, William ;
Ready, Shannon ;
Cook, Kim ;
Damschroder, Melissa ;
Kinch, Michael ;
Kiener, Peter A. ;
Woods, Rob ;
Gao, Changshou ;
Dall'Acqua, William ;
Wu, Herren ;
Coats, Steven .
NEOPLASIA, 2009, 11 (06) :509-U14
[6]   Exactly solvable models: The road towards a rigorous treatment of phase transitions in finite systems [J].
Bugaev, K. A. .
PHYSICS OF PARTICLES AND NUCLEI, 2007, 38 (04) :447-468
[7]  
Buxton BH, 1904, J MED RES, V13, P431
[8]   Quantitative effect of scaffold abundance on signal propagation [J].
Chapman, Stephen A. ;
Asthagiri, Anand R. .
MOLECULAR SYSTEMS BIOLOGY, 2009, 5
[9]   Phage Display-based Strategies for Cloning and Optimization of Monoclonal Antibodies Directed against Human Pathogens [J].
Clementi, Nicola ;
Mancini, Nicasio ;
Solforosi, Laura ;
Castelli, Matteo ;
Clementi, Massimo ;
Burioni, Roberto .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2012, 13 (07) :8273-8292
[10]  
DELEAN A, 1980, J BIOL CHEM, V255, P7108