Molecular Polarization Effects on the Relative Energies of the Real and Putative Crystal Structures of Valine

被引:70
作者
Cooper, Timothy G. [1 ]
Hejczyk, Katarzyna E. [1 ]
Jones, William [1 ]
Day, Graeme M. [1 ]
机构
[1] Univ Cambridge, Dept Chem, Pfizer Inst Pharmaceut Mat Sci, Cambridge CB2 1EW, England
关键词
D O I
10.1021/ct800195g
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The computer-generation of the crystal structures of the a-amino acid valine is used as a challenging test of lattice energy modeling methods for crystal structure prediction of flexible polar organic molecules and, specifically, to examine the importance of molecular polarization on calculated relative energies. Total calculated crystal energies, which combine atom-atom model potential calculations of intermolecular interactions with density functional theory intramolecular energies, do not effectively distinguish the real (known) crystal structures from the rest of the low energy computer-generated alternatives when the molecular electrostatic models are derived from isolated molecule calculations. However, we find that introducing a simple model for the bulk crystalline environment when calculating the molecular energy and electron density distribution leads to important changes in relative total crystal energies and correctly distinguishes the observed crystal structures from the set of computer-generated possibilities. This study highlights the importance of polarization of the molecular charge distribution in crystal structure prediction calculations, especially for polar flexible molecules, and suggests a computationally inexpensive approach to include its effect in lattice energy calculations.
引用
收藏
页码:1795 / 1805
页数:11
相关论文
共 47 条
  • [1] *ACC INC, 2004, MS MOD REL 3 0 1
  • [2] The Cambridge Structural Database: a quarter of a million crystal structures and rising
    Allen, FH
    [J]. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1): : 380 - 388
  • [3] [Anonymous], CAMBRIDGE STRUCTURAL
  • [5] Parametrizing a polarizable force field from ab initio data.: I.: The fluctuating point charge model
    Banks, JL
    Kaminski, GA
    Zhou, RH
    Mainz, DT
    Berne, BJ
    Friesner, RA
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (02) : 741 - 754
  • [6] Dealing with the impact of ritonavir polymorphs on the late stages of bulk drug process development
    Chemburkar, SR
    Bauer, J
    Deming, K
    Spiwek, H
    Patel, K
    Morris, J
    Henry, R
    Spanton, S
    Dziki, W
    Porter, W
    Quick, J
    Bauer, P
    Donaubauer, J
    Narayanan, BA
    Soldani, M
    Riley, D
    McFarland, K
    [J]. ORGANIC PROCESS RESEARCH & DEVELOPMENT, 2000, 4 (05) : 413 - 417
  • [7] COMPACK:: a program for identifying crystal structure similarity using distances
    Chisholm, JA
    Motherwell, S
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2005, 38 : 228 - 231
  • [8] Role of electrostatic interactions in determining the crystal structures of polar organic molecules. A distributed multipole study
    Coombes, DS
    Price, SL
    Willock, DJ
    Leslie, M
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (18) : 7352 - 7360
  • [9] Database guided conformation selection in crystal structure prediction of alanine
    Cooper, Timothy G.
    Jones, William
    Motherwell, W. D. Samuel
    Day, Graeme M.
    [J]. CRYSTENGCOMM, 2007, 9 (07): : 595 - 602
  • [10] New developments in the polarizable continuum model for quantum mechanical and classical calculations on molecules in solution
    Cossi, M
    Scalmani, G
    Rega, N
    Barone, V
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (01) : 43 - 54