The Autism Sequencing Consortium: Large-Scale, High-Throughput Sequencing in Autism Spectrum Disorders

被引:122
作者
Buxbaum, Joseph D. [1 ,2 ,3 ,4 ]
Daly, Mark J. [5 ,6 ]
Devlin, Bernie [7 ]
Lehner, Thomas [8 ]
Roeder, Kathryn [9 ,10 ]
State, Matthew W. [11 ,12 ]
机构
[1] Mt Sinai Sch Med, Seaver Autism Ctr, Dept Psychiat, New York, NY 10029 USA
[2] Mt Sinai Sch Med, Seaver Autism Ctr, Dept Neurosci, New York, NY 10029 USA
[3] Mt Sinai Sch Med, Seaver Autism Ctr, Dept Genet & Genom Sci, New York, NY 10029 USA
[4] Mt Sinai Sch Med, Friedman Brain Inst, New York, NY 10029 USA
[5] Harvard Univ, Sch Med, Broad Inst, Boston, MA 02114 USA
[6] Harvard Univ, Sch Med, Translat Genet Unit, Boston, MA 02114 USA
[7] Univ Pittsburgh, Sch Med, Dept Psychiat, Pittsburgh, PA 15213 USA
[8] NIMH, NIH, Bethesda, MD 20892 USA
[9] Carnegie Mellon Univ, Dept Stat, Pittsburgh, PA 15213 USA
[10] Carnegie Mellon Univ, Lane Ctr Computat Biol, Pittsburgh, PA 15213 USA
[11] Yale Univ, Dept Psychiat, New Haven, CT 06520 USA
[12] Yale Univ, Program Neurogenet, Ctr Child Study, New Haven, CT 06520 USA
关键词
DE-NOVO MUTATIONS; COPY NUMBER VARIATION;
D O I
10.1016/j.neuron.2012.12.008
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Research during the past decade has seen significant progress in the understanding of the genetic architecture of autism spectrum disorders (ASDs), with gene discovery accelerating as the characterization of genomic variation has become increasingly comprehensive. At the same time, this research has highlighted ongoing challenges. Here we address the enormous impact of high-throughput sequencing (HTS) on ASD gene discovery, outline a consensus view for leveraging this technology, and describe a large multisite collaboration developed to accomplish these goals. Similar approaches could prove effective for severe neurodevelopmental disorders more broadly.
引用
收藏
页码:1052 / 1056
页数:5
相关论文
共 14 条
[1]   Individual common variants exert weak effects on the risk for autism spectrum disorderspi [J].
Anney, Richard ;
Klei, Lambertus ;
Pinto, Dalila ;
Almeida, Joana ;
Bacchelli, Elena ;
Baird, Gillian ;
Bolshakova, Nadia ;
Boelte, Sven ;
Bolton, Patrick F. ;
Bourgeron, Thomas ;
Brennan, Sean ;
Brian, Jessica ;
Casey, Jillian ;
Conroy, Judith ;
Correia, Catarina ;
Corsello, Christina ;
Crawford, Emily L. ;
de Jonge, Maretha ;
Delorme, Richard ;
Duketis, Eftichia ;
Duque, Frederico ;
Estes, Annette ;
Farrar, Penny ;
Fernandez, Bridget A. ;
Folstein, Susan E. ;
Fombonne, Eric ;
Gilbert, John ;
Gillberg, Christopher ;
Glessner, Joseph T. ;
Green, Andrew ;
Green, Jonathan ;
Guter, Stephen J. ;
Heron, Elizabeth A. ;
Holt, Richard ;
Howe, Jennifer L. ;
Hughes, Gillian ;
Hus, Vanessa ;
Igliozzi, Roberta ;
Jacob, Suma ;
Kenny, Graham P. ;
Kim, Cecilia ;
Kolevzon, Alexander ;
Kustanovich, Vlad ;
Lajonchere, Clara M. ;
Lamb, Janine A. ;
Law-Smith, Miriam ;
Leboyer, Marion ;
Le Couteur, Ann ;
Leventhal, Bennett L. ;
Liu, Xiao-Qing .
HUMAN MOLECULAR GENETICS, 2012, 21 (21) :4781-4792
[2]   Etiological heterogeneity in autism spectrum disorders: More than 100 genetic and genomic disorders and still counting [J].
Betancur, Catalina .
BRAIN RESEARCH, 2011, 1380 :42-77
[3]   A copy number variation morbidity map of developmental delay [J].
Cooper, Gregory M. ;
Coe, Bradley P. ;
Girirajan, Santhosh ;
Rosenfeld, Jill A. ;
Vu, Tiffany H. ;
Baker, Carl ;
Williams, Charles ;
Stalker, Heather ;
Hamid, Rizwan ;
Hannig, Vickie ;
Abdel-Hamid, Hoda ;
Bader, Patricia ;
McCracken, Elizabeth ;
Niyazov, Dmitriy ;
Leppig, Kathleen ;
Thiese, Heidi ;
Hummel, Marybeth ;
Alexander, Nora ;
Gorski, Jerome ;
Kussmann, Jennifer ;
Shashi, Vandana ;
Johnson, Krys ;
Rehder, Catherine ;
Ballif, Blake C. ;
Shaffer, Lisa G. ;
Eichler, Evan E. .
NATURE GENETICS, 2011, 43 (09) :838-U44
[4]   Genetic architecture in autism spectrum disorder [J].
Devlin, Bernie ;
Scherer, Stephen W. .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2012, 22 (03) :229-237
[5]   Do common variants play a role in risk for autism? Evidence and theoretical musings [J].
Devlin, Bernie ;
Melhem, Nadine ;
Roeder, Kathryn .
BRAIN RESEARCH, 2011, 1380 :78-84
[6]   Genetic Heritability and Shared Environmental Factors Among Twin Pairs With Autism [J].
Hallmayer, Joachim ;
Cleveland, Sue ;
Torres, Andrea ;
Phillips, Jennifer ;
Cohen, Brianne ;
Torigoe, Tiffany ;
Miller, Janet ;
Fedele, Angie ;
Collins, Jack ;
Smith, Karen ;
Lotspeich, Linda ;
Croen, Lisa A. ;
Ozonoff, Sally ;
Lajonchere, Clara ;
Grether, Judith K. ;
Risch, Neil .
ARCHIVES OF GENERAL PSYCHIATRY, 2011, 68 (11) :1095-1102
[7]   De Novo Gene Disruptions in Children on the Autistic Spectrum [J].
Iossifov, Ivan ;
Ronemus, Michael ;
Levy, Dan ;
Wang, Zihua ;
Hakker, Inessa ;
Rosenbaum, Julie ;
Yamrom, Boris ;
Lee, Yoon-ha ;
Narzisi, Giuseppe ;
Leotta, Anthony ;
Kendall, Jude ;
Grabowska, Ewa ;
Ma, Beicong ;
Marks, Steven ;
Rodgers, Linda ;
Stepansky, Asya ;
Troge, Jennifer ;
Andrews, Peter ;
Bekritsky, Mitchell ;
Pradhan, Kith ;
Ghiban, Elena ;
Kramer, Melissa ;
Parla, Jennifer ;
Demeter, Ryan ;
Fulton, Lucinda L. ;
Fulton, Robert S. ;
Magrini, Vincent J. ;
Ye, Kenny ;
Darnell, Jennifer C. ;
Darnell, Robert B. ;
Mardis, Elaine R. ;
Wilson, Richard K. ;
Schatz, Michael C. ;
McCombie, W. Richard ;
Wigler, Michael .
NEURON, 2012, 74 (02) :285-299
[8]   Common genetic variants, acting additively, are a major source of risk for autism [J].
Klei, Lambertus ;
Sanders, Stephan J. ;
Murtha, Michael T. ;
Hus, Vanessa ;
Lowe, Jennifer K. ;
Willsey, A. Jeremy ;
Moreno-De-Luca, Daniel ;
Yu, Timothy W. ;
Fombonne, Eric ;
Geschwind, Daniel ;
Grice, Dorothy E. ;
Ledbetter, David H. ;
Lord, Catherine ;
Mane, Shrikant M. ;
Martin, Christa Lese ;
Martin, Donna M. ;
Morrow, Eric M. ;
Walsh, Christopher A. ;
Melhem, Nadine M. ;
Chaste, Pauline ;
Sutcliffe, James S. ;
State, Matthew W. ;
Cook, Edwin H., Jr. ;
Roeder, Kathryn ;
Devlin, Bernie .
MOLECULAR AUTISM, 2012, 3
[9]   Patterns and rates of exonic de novo mutations in autism spectrum disorders [J].
Neale, Benjamin M. ;
Kou, Yan ;
Liu, Li ;
Ma'ayan, Avi ;
Samocha, Kaitlin E. ;
Sabo, Aniko ;
Lin, Chiao-Feng ;
Stevens, Christine ;
Wang, Li-San ;
Makarov, Vladimir ;
Polak, Paz ;
Yoon, Seungtai ;
Maguire, Jared ;
Crawford, Emily L. ;
Campbell, Nicholas G. ;
Geller, Evan T. ;
Valladares, Otto ;
Schafer, Chad ;
Liu, Han ;
Zhao, Tuo ;
Cai, Guiqing ;
Lihm, Jayon ;
Dannenfelser, Ruth ;
Jabado, Omar ;
Peralta, Zuleyma ;
Nagaswamy, Uma ;
Muzny, Donna ;
Reid, Jeffrey G. ;
Newsham, Irene ;
Wu, Yuanqing ;
Lewis, Lora ;
Han, Yi ;
Voight, Benjamin F. ;
Lim, Elaine ;
Rossin, Elizabeth ;
Kirby, Andrew ;
Flannick, Jason ;
Fromer, Menachem ;
Shakir, Khalid ;
Fennell, Tim ;
Garimella, Kiran ;
Banks, Eric ;
Poplin, Ryan ;
Gabriel, Stacey ;
DePristo, Mark ;
Wimbish, Jack R. ;
Boone, Braden E. ;
Levy, Shawn E. ;
Betancur, Catalina ;
Sunyaev, Shamil .
NATURE, 2012, 485 (7397) :242-U129
[10]   Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations [J].
O'Roak, Brian J. ;
Vives, Laura ;
Girirajan, Santhosh ;
Karakoc, Emre ;
Krumm, Niklas ;
Coe, Bradley P. ;
Levy, Roie ;
Ko, Arthur ;
Lee, Choli ;
Smith, Joshua D. ;
Turner, Emily H. ;
Stanaway, Ian B. ;
Vernot, Benjamin ;
Malig, Maika ;
Baker, Carl ;
Reilly, Beau ;
Akey, Joshua M. ;
Borenstein, Elhanan ;
Rieder, Mark J. ;
Nickerson, Deborah A. ;
Bernier, Raphael ;
Shendure, Jay ;
Eichler, Evan E. .
NATURE, 2012, 485 (7397) :246-U136