A novel specific DNA marker in Saccharomyces bayanus for species identification of the Saccharomyces sensu stilcto complex

被引:6
作者
Huang, Chien-Hsun [1 ]
Lee, Fwu-Ling [1 ]
Tai, Chun-Ju [1 ]
机构
[1] Food Ind Res & Dev Inst, Bioresource Collect & Res Ctr, Hsinchu 30099, Taiwan
关键词
DNA fingerprinting; Novel DNA sequence; Soccharomyces bayanus; Saccharomyces sensu stricto complex; Species identification;
D O I
10.1016/j.mimet.2008.08.005
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
This study was based on RAPD fingerprinting for species identification of the Saccharomyces sensu stricto complex. 40 random primers were used for RAPD analysis. The results showed that one of these primers, OPT-18, produced a 974 bp species-specific band, which was only found in the tested S. bayanus. Afterward this specific fragment was isolated from agarose gel and ligated into vector for DNA sequencing. A pair of primer SpeOPT18Sbay-F2 and SpeOPT18Sbay-R2 were designed according to the cloned species-specific sequence, which was employed for PCR with the template DNA of the S. sensu stricto strains, single 779 bp species-specific band was only found in S. bayanus. Therefore, we conclude that our novel species DNA marker could be used to rapidly and accurately identify the species of S. bayanus from S. sensu stricto complex by direct PCR. (C) 2008 Elsevier B.V. All rights reserved.
引用
收藏
页码:531 / 534
页数:4
相关论文
共 28 条
[1]   AFLP analysis of type strains and laboratory and industrial strains of Saccharomyces sensu stricto and its application to phenetic clustering [J].
Azumi, M ;
Goto-Yamamoto, N .
YEAST, 2001, 18 (12) :1145-1154
[2]  
Blondin B., 1988, Rev Francaise Oenol, V28, P7
[3]   Identification of yeasts within Saccharomyces sensu stricto complex by PCR-fingerprinting [J].
Brito dos Santos, Scheila Karina ;
Basilio, Anna Carla Moreira ;
Ramos Valente Brasileiro, Bereneuza Tavares ;
Simoes, Diogo Ardaillon ;
da Silva-Filho, Euripedes Alves ;
de Morais, Marcos, Jr. .
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 2007, 23 (11) :1613-1620
[4]   Application of SSCP-PCR fingerprinting to profile the yeast community in raw milk Salers cheeses [J].
Callon, C ;
Delbès, C ;
Duthoit, F ;
Montel, MC .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2006, 29 (02) :172-180
[5]   Quantitative real time PCR assays for the enumeration of Saccharomyces cerevisiae and the Saccharomyces sensu stricto complex in human feces [J].
Chang, Ho-Won ;
Nam, Young-Do ;
Sung, Youlboong ;
Kim, Kyoung-Ho ;
Roh, Seong Woon ;
Yoon, Jung-Hoon ;
An, Kwang-Guk ;
Bae, Jin-Woo .
JOURNAL OF MICROBIOLOGICAL METHODS, 2007, 71 (03) :191-201
[6]   Applications of the random amplified polymorphic DNA (RAPD) assay for genetic analysis of livestock species [J].
Cushwa, WT ;
Medrano, JF .
ANIMAL BIOTECHNOLOGY, 1996, 7 (01) :11-31
[7]   Analysis of the genetic variability in the species of the Saccharomyces sensu stricto complex [J].
Fernández-Espinar, MT ;
Barrio, E ;
Querol, A .
YEAST, 2003, 20 (14) :1213-1226
[8]   Microsatellite typing as a new tool for identification of Saccharomyces cerevisiae strains [J].
Hennequin, C ;
Thierry, A ;
Richard, GF ;
Lecointre, G ;
Nguyen, HV ;
Gaillardin, C ;
Dujon, B .
JOURNAL OF CLINICAL MICROBIOLOGY, 2001, 39 (02) :551-559
[9]   PCR differentiation of Saccharomyces cerevisiae from Saccharomyces bayanus Saccharomyces pastorianus using specific primers [J].
Josepa, S ;
Guillamon, JM ;
Cano, J .
FEMS MICROBIOLOGY LETTERS, 2000, 193 (02) :255-259
[10]   Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses [J].
Kurtzman, CP ;
Robnett, CJ .
FEMS YEAST RESEARCH, 2003, 3 (04) :417-432