Structure, conformational stability, and enzymatic properties of acylphosphatase from the hyperthermophile Sulfolobus solfataricus

被引:41
作者
Corazza, A
Rosano, C
Pagano, K
Alverdi, V
Esposito, G
Capanni, C
Bemporad, F
Plakoutsi, G
Stefani, M
Chiti, F
Zuccotti, S
Bolognesi, M
Viglino, P
机构
[1] Univ Florence, Dipartimento Sci Biochim, I-50134 Florence, Italy
[2] Univ Udine, Dipartimento Sci & Technol Biomed, I-33100 Udine, Italy
[3] Univ Udine, Ctr Eccellenza MATI, I-33100 Udine, Italy
[4] Ist Nazl Ric Canc, IST, SC Biol Strutturale, I-16132 Genoa, Italy
[5] Univ Florence, Ctr Eccelenza DENOTHE, I-50121 Florence, Italy
[6] Univ Genoa, INFM, Dipartimento Fis, Genoa, Italy
[7] Univ Genoa, CEBR, Ctr Eccellenza, Genoa, Italy
[8] Univ Milan, Dipartimento Sci Biomol & Biotecnol, I-20122 Milan, Italy
关键词
H-1 NMR spectroscopy; X-ray crystallography; protein thermostability; protein structure; Sulfolobus solfataricus acylphosphatase;
D O I
10.1002/prot.20703
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The structure of AcP from the hyperthermophilic archaeon Sulfolobus solfataricus has been determined by H-1-NMR spectroscopy and X-ray crystallography. Solution and crystal structures (1.27 angstrom resolution, R-factor 13.7%) were obtained on the full-length protein and on an N-truncated form lacking the first 12 residues, respectively. The overall Sso AcP fold, starting at residue 13, displays the same beta alpha beta alpha beta topology previously described for other members of the AcP family from mesophilic sources. The unstructured N-terminal tail may be crucial for the unusual aggregation mechanism of Sso AcP previously reported. Sso AcP catalytic activity is reduced at room temperature but rises at its working temperature to values comparable to those displayed by its mesophilic counterparts at 25-37 degrees C. Such a reduced activity can result from protein rigidity and from the active site stiffening due the presence of a salt bridge between the C-terminal carboxylate and the active site arginine. Sso AcP is characterized by a melting temperature, T-m, of 100.8 degrees C and an unfolding free energy, Delta G(U-F)(H2O), at 28 degrees C and 81 degrees C of 48.7 and 20.6 kJ mol(-1), respectively. The kinetic and structural data indicate that mesophilic and hyperthermophilic AcP's display similar enzymatic activities and conformational stabilities at their working conditions. Structural analysis of the factor responsible for Sso AcP thermostability with respect to mesophilic AcP's revealed the importance of a ion pair network stabilizing particularly the beta-sheet and the loop connecting the fourth and fifth strands, together with increased density packing, loop shortening and a higher alpha-helical propensity.
引用
收藏
页码:64 / 79
页数:16
相关论文
共 73 条
[1]   Studying the folding process of the acylphosphatase from Sulfolobus solfataricus.: A comparative analysis with other proteins from the same superfamily [J].
Bemporad, F ;
Capanni, C ;
Calamai, M ;
Tutino, ML ;
Stefani, M ;
Chiti, F .
BIOCHEMISTRY, 2004, 43 (28) :9116-9126
[2]   COHERENCE TRANSFER BY ISOTROPIC MIXING - APPLICATION TO PROTON CORRELATION SPECTROSCOPY [J].
BRAUNSCHWEILER, L ;
ERNST, RR .
JOURNAL OF MAGNETIC RESONANCE, 1983, 53 (03) :521-528
[3]   Structural and genomic correlates of hyperthermostability [J].
Cambillau, C ;
Claverie, JM .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (42) :32383-32386
[4]   Crystal structure of a hyperthermophilic archaeal acylphosphatase from Pyrococcus horikoshii -: Structural insights into enzymatic catalysis, thermostability, and dimerization [J].
Cheung, YY ;
Lam, SY ;
Chu, WK ;
Allen, MD ;
Bycroft, M ;
Wong, KB .
BIOCHEMISTRY, 2005, 44 (12) :4601-4611
[5]   Conformational stability of muscle acylphosphatase: The role of temperature, denaturant concentration, and pH [J].
Chiti, F ;
van Nuland, NAJ ;
Taddei, N ;
Magherini, F ;
Stefani, M ;
Ramponi, G ;
Dobson, CM .
BIOCHEMISTRY, 1998, 37 (05) :1447-1455
[6]   Designing conditions for in vitro formation of amyloid protofilaments and fibrils [J].
Chiti, F ;
Webster, P ;
Taddei, N ;
Clark, A ;
Stefani, M ;
Ramponi, G ;
Dobson, CM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (07) :3590-3594
[7]  
Chiti F, 1999, NAT STRUCT BIOL, V6, P1005
[8]   Kinetic partitioning of protein folding and aggregation [J].
Chiti, F ;
Taddei, N ;
Baroni, F ;
Capanni, C ;
Stefani, M ;
Ramponi, G ;
Dobson, CM .
NATURE STRUCTURAL BIOLOGY, 2002, 9 (02) :137-143
[9]   Reduction of the amyloidogenicity of a protein by specific binding of ligands to the native conformation [J].
Chiti, F ;
Taddei, N ;
Stefani, M ;
Dobson, CM ;
Ramponi, G .
PROTEIN SCIENCE, 2001, 10 (04) :879-886
[10]   Mutational analysis of the propensity for amyloid formation by a globular protein [J].
Chiti, F ;
Taddei, N ;
Bucciantini, M ;
White, P ;
Ramponi, G ;
Dobson, CM .
EMBO JOURNAL, 2000, 19 (07) :1441-1449