The genome of melon (Cucumis melo L.)

被引：601

作者：

Garcia-Mas, Jordi ^{[1
]}

Benjak, Andrej ^{[1
]}

Sanseverino, Walter ^{[1
]}

Bourgeois, Michael ^{[1
]}

Mir, Gisela ^{[1
]}

Gonzalez, Victor M. ^{[1
]}

Henaff, Elizabeth ^{[1
]}

Camara, Francisco ^{[2
]}

Cozzuto, Luca ^{[2
]}

Lowy, Ernesto ^{[2
]}

Alioto, Tyler ^{[3
]}

Capella-Gutierrez, Salvador ^{[2
]}

Blanca, Jose ^{[4
]}

Canizares, Joaquin ^{[4
]}

Ziarsolo, Pello ^{[4
]}

Gonzalez-Ibeas, Daniel ^{[5
]}

Rodriguez-Moreno, Luis ^{[5
]}

Droege, Marcus ^{[6
]}

Du, Lei ^{[7
]}

Alvarez-Tejado, Miguel ^{[8
]}

Lorente-Galdos, Belen ^{[9
]}

Mele, Marta ^{[2
,9
]}

Yang, Luming

Weng, Yiqun ^{[10
]}

Navarro, Arcadi ^{[9
,11
]}

Marques-Bonet, Tomas ^{[9
,11
]}

Aranda, Miguel A. ^{[5
]}

Nuez, Fernando ^{[4
]}

Pico, Belen ^{[4
]}

Gabaldon, Toni ^{[2
]}

Roma, Guglielmo ^{[2
]}

Guigo, Roderic ^{[2
]}

Casacuberta, Josep M. ^{[1
]}

Arus, Pere ^{[1
]}

Puigdomenech, Pere ^{[1
]}

机构：

[1] Univ Barcelona, Univ Autonoma Barcelona, Inst Recerca & Tecnol Agroalimentaries, CSIC,Ctr Res Agr Genom, Barcelona 08193, Spain

[2] Univ Pompeu Fabra, Ctr Genom Regulat, Barcelona 08003, Spain

[3] Ctr Nacl Anal Genom, Barcelona 08028, Spain

[4] Univ Politecn Valencia, Inst Conservat & Breeding Agr Biodivers, Valencia 46022, Spain

[5] CSIC, Ctr Edafol & Biol Aplicada Segura, Dept Biol Estres & Patol Vegetal, Murcia 30100, Spain

[6] Roche Diagnost Deutschland GmbH, D-11668305 Mannheim, Germany

[7] Roche Diagnost Asia Pacific Pte Ltd, Singapore 168730, Singapore

[8] Roche Appl Sci, Barcelona 08174, Spain

[9] Univ Pompeu Fabra, CSIC, Inst Biol Evolutiva, Barcelona 08003, Spain

[10] Univ Wisconsin, Dept Hort, USDA ARS, Madison, WI 53706 USA

[11] Inst Catalana Recerca & Estudis Avancats, Barcelona 08010, Spain

来源：

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | 2012年 / 109卷 / 29期

基金：

欧洲研究理事会;

关键词：

de novo genome sequence; phylome; SEGMENTAL DUPLICATIONS; MOLECULAR MARKERS; C; MELO; RESISTANCE; SEQUENCE; GENE; SATIVUS; ORTHOLOGY; TRAITS; PLANTS;

D O I：

10.1073/pnas.1205415109

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

We report the genome sequence of melon, an important horticultural crop worldwide. We assembled 375 Mb of the double-haploid line DHL92, representing 83.3% of the estimated melon genome. We predicted 27,427 protein-coding genes, which we analyzed by reconstructing 22,218 phylogenetic trees, allowing mapping of the orthology and paralogy relationships of sequenced plant genomes. We observed the absence of recent whole-genome duplications in the melon lineage since the ancient eudicot triplication, and our data suggest that transposon amplification may in part explain the increased size of the melon genome compared with the close relative cucumber. A low number of nucleotide-binding site-leucine-rich repeat disease resistance genes were annotated, suggesting the existence of specific defense mechanisms in this species. The DHL92 genome was compared with that of its parental lines allowing the quantification of sequence variability in the species. The use of the genome sequence in future investigations will facilitate the understanding of evolution of cucurbits and the improvement of breeding strategies.

引用

页码：11872 / 11877

页数：6

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