共 38 条
Analysis of protein phosphorylation: methods and strategies for studying kinases and substrates
被引:71
作者:

Peck, SC
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Missouri, Columbia, MO 65211 USA Univ Missouri, Columbia, MO 65211 USA
机构:
[1] Univ Missouri, Columbia, MO 65211 USA
关键词:
signal transduction;
in vitro kinase assay;
phosphoproteome;
phosphorylation site analysis;
phosphatase assay;
mitogen-activated protein kinase;
D O I:
10.1111/j.1365-313X.2005.02613.x
中图分类号:
Q94 [植物学];
学科分类号:
071001 ;
摘要:
Protein phosphorylation is a highly conserved mechanism for regulating protein function, being found in all prokaryotes and eukaryotes examined. Phosphorylation can alter protein activity or subcellular localization, target proteins for degradation and effect dynamic changes in protein complexes. In many cases, different kinases may be involved in each of these processes for a single protein, allowing a large degree of combinatorial regulation at the post-translational level. Therefore, knowing which kinases are activated during a response and which proteins are substrates is integral to understanding the mechanistic regulation of a wide range of biological processes. In this paper, I will describe methods for monitoring kinase activity, investigating kinase-substrate specificity, examining phosphorylation in planta and the determination of phosphorylation sites in a protein. In addition, strategic considerations for experimental design and variables will be discussed.
引用
收藏
页码:512 / 522
页数:11
相关论文
共 38 条
[1]
MAP kinase signalling cascade in Arabidopsis innate immunity
[J].
Asai, T
;
Tena, G
;
Plotnikova, J
;
Willmann, MR
;
Chiu, WL
;
Gomez-Gomez, L
;
Boller, T
;
Ausubel, FM
;
Sheen, J
.
NATURE,
2002, 415 (6875)
:977-983

Asai, T
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Tena, G
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Plotnikova, J
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Willmann, MR
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Chiu, WL
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

论文数: 引用数:
h-index:
机构:

Boller, T
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Ausubel, FM
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Sheen, J
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA
[2]
Large-scale characterization of HeLa cell nuclear phosphoproteins
[J].
Beausoleil, SA
;
Jedrychowski, M
;
Schwartz, D
;
Elias, JE
;
Villén, J
;
Li, JX
;
Cohn, MA
;
Cantley, LC
;
Gygi, SP
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2004, 101 (33)
:12130-12135

Beausoleil, SA
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Jedrychowski, M
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Schwartz, D
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Elias, JE
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Villén, J
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Li, JX
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Cohn, MA
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Cantley, LC
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA

Gygi, SP
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Syst Biol, Boston, MA 02115 USA
[3]
Identifying protein kinase substrates:: hunting for the organ-grinder's monkeys
[J].
Berwick, DC
;
Tavaré, JM
.
TRENDS IN BIOCHEMICAL SCIENCES,
2004, 29 (05)
:227-232

Berwick, DC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Bristol, Sch Med Sci, Dept Biochem, Bristol BS8 1TD, Avon, England

Tavaré, JM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Bristol, Sch Med Sci, Dept Biochem, Bristol BS8 1TD, Avon, England
[4]
Calcium signaling through protein kinases. The Arabidopsis calcium-dependent protein kinase gene family
[J].
Cheng, SH
;
Willmann, MR
;
Chen, HC
;
Sheen, J
.
PLANT PHYSIOLOGY,
2002, 129 (02)
:469-485

Cheng, SH
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Willmann, MR
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Chen, HC
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA

Sheen, J
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA Harvard Univ, Sch Med, Dept Genet, Boston, MA 02114 USA
[5]
PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis
[J].
Fankhauser, C
;
Yeh, KC
;
Lagarias, JC
;
Zhang, H
;
Elich, TD
;
Chory, J
.
SCIENCE,
1999, 284 (5419)
:1539-1541

Fankhauser, C
论文数: 0 引用数: 0
h-index: 0
机构: Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA

Yeh, KC
论文数: 0 引用数: 0
h-index: 0
机构: Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA

Lagarias, JC
论文数: 0 引用数: 0
h-index: 0
机构: Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA

Zhang, H
论文数: 0 引用数: 0
h-index: 0
机构: Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA

Elich, TD
论文数: 0 引用数: 0
h-index: 0
机构: Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA

Chory, J
论文数: 0 引用数: 0
h-index: 0
机构:
Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA
[6]
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
[J].
Ficarro, SB
;
McCleland, ML
;
Stukenberg, PT
;
Burke, DJ
;
Ross, MM
;
Shabanowitz, J
;
Hunt, DF
;
White, FM
.
NATURE BIOTECHNOLOGY,
2002, 20 (03)
:301-305

Ficarro, SB
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Charlottesville, VA 22901 USA

McCleland, ML
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Charlottesville, VA 22901 USA

Stukenberg, PT
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Charlottesville, VA 22901 USA

Burke, DJ
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Charlottesville, VA 22901 USA

Ross, MM
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Charlottesville, VA 22901 USA

Shabanowitz, J
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Charlottesville, VA 22901 USA

Hunt, DF
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Charlottesville, VA 22901 USA

White, FM
论文数: 0 引用数: 0
h-index: 0
机构:
MDS Proteom, Charlottesville, VA 22901 USA MDS Proteom, Charlottesville, VA 22901 USA
[7]
MNK1, a new MAP kinase-activated protein kinase, isolated by a novel expression screening method for identifying protein kinase substrates
[J].
Fukunaga, R
;
Hunter, T
.
EMBO JOURNAL,
1997, 16 (08)
:1921-1933

Fukunaga, R
论文数: 0 引用数: 0
h-index: 0
机构:
SALK INST BIOL STUDIES, MOL BIOL & VIROL LAB, LA JOLLA, CA 92037 USA SALK INST BIOL STUDIES, MOL BIOL & VIROL LAB, LA JOLLA, CA 92037 USA

Hunter, T
论文数: 0 引用数: 0
h-index: 0
机构:
SALK INST BIOL STUDIES, MOL BIOL & VIROL LAB, LA JOLLA, CA 92037 USA SALK INST BIOL STUDIES, MOL BIOL & VIROL LAB, LA JOLLA, CA 92037 USA
[8]
Identification of casein kinase I substrates by in vitro expression cloning screening
[J].
Gao, ZH
;
Metherall, J
;
Virshup, DM
.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS,
2000, 268 (02)
:562-566

Gao, ZH
论文数: 0 引用数: 0
h-index: 0
机构: Univ Utah, Dept Oncol Sci, Sch Med 5C334, Salt Lake City, UT 84132 USA

Metherall, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Utah, Dept Oncol Sci, Sch Med 5C334, Salt Lake City, UT 84132 USA

Virshup, DM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Utah, Dept Oncol Sci, Sch Med 5C334, Salt Lake City, UT 84132 USA
[9]
A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies - Identification of a novel protein, Frigg, as a protein kinase A substrate
[J].
Gronborg, M
;
Kristiansen, TZ
;
Stensballe, A
;
Andersen, JS
;
Ohara, O
;
Mann, M
;
Jensen, ON
;
Pandey, A
.
MOLECULAR & CELLULAR PROTEOMICS,
2002, 1 (07)
:517-527

Gronborg, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Ctr Expt Bioinformat, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark

Kristiansen, TZ
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Ctr Expt Bioinformat, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark

Stensballe, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Ctr Expt Bioinformat, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark

Andersen, JS
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Ctr Expt Bioinformat, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark

Ohara, O
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Ctr Expt Bioinformat, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark

Mann, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Ctr Expt Bioinformat, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark

Jensen, ON
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Ctr Expt Bioinformat, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark

Pandey, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Ctr Expt Bioinformat, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark
[10]
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
[J].
Gruhler, A
;
Olsen, JV
;
Mohammed, S
;
Mortensen, P
;
Færgeman, NJ
;
Mann, M
;
Jensen, ON
.
MOLECULAR & CELLULAR PROTEOMICS,
2005, 4 (03)
:310-327

Gruhler, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Prot Res Grp, Lipid Hormone Grp, DK-5230 Odense, Denmark

Olsen, JV
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Prot Res Grp, Lipid Hormone Grp, DK-5230 Odense, Denmark

Mohammed, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Prot Res Grp, Lipid Hormone Grp, DK-5230 Odense, Denmark

Mortensen, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Prot Res Grp, Lipid Hormone Grp, DK-5230 Odense, Denmark

Færgeman, NJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Prot Res Grp, Lipid Hormone Grp, DK-5230 Odense, Denmark

Mann, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Prot Res Grp, Lipid Hormone Grp, DK-5230 Odense, Denmark

Jensen, ON
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Prot Res Grp, Lipid Hormone Grp, DK-5230 Odense, Denmark