Expanding metabolism for biosynthesis of nonnatural alcohols

被引:306
作者
Zhang, Kechun [1 ,2 ]
Sawaya, Michael R. [3 ,4 ]
Eisenberg, David S. [3 ,4 ]
Liao, James C. [1 ,2 ,4 ]
机构
[1] Univ Calif Los Angeles, Dept Chem, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Dept Biomol Engn & Chem, Los Angeles, CA 90095 USA
[3] Univ Calif Los Angeles, Dept Biochem, Los Angeles, CA 90095 USA
[4] Univ Calif Los Angeles, Inst Genom & Prote, Los Angeles, CA 90095 USA
关键词
metabolic engineering; protein engineering; chain elongation; long chain alcohols;
D O I
10.1073/pnas.0807157106
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Nature uses a limited set of metabolites to perform all of the biochemical reactions. To increase the metabolic capabilities of biological systems, we have expanded the natural metabolic network, using a nonnatural metabolic engineering approach. The branched-chain amino acid pathways are extended to produce abiotic longer chain keto acids and alcohols by engineering the chain elongation activity of 2-isopropylmalate synthase and altering the substrate specificity of downstream enzymes through rational protein design. When introduced into Escherichia coli, this nonnatural biosynthetic pathway produces various long-chain alcohols with carbon number ranging from 5 to 8. In particular, we demonstrate the feasibility of this approach by optimizing the biosynthesis of the 6-carbon alcohol, (S)-3-methyl-1-pentanol. This work demonstrates an approach to build artificial metabolism beyond the natural metabolic network. Nonnatural metabolites such as long chain alcohols are now included in the metabolite family of living systems.
引用
收藏
页码:20653 / 20658
页数:6
相关论文
共 29 条
[1]   Combinatorial and computational challenges for biocatalyst design [J].
Arnold, FH .
NATURE, 2001, 409 (6817) :253-257
[2]   Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels [J].
Atsumi, Shota ;
Hanai, Taizo ;
Liao, James C. .
NATURE, 2008, 451 (7174) :86-U13
[3]   Structural plasticity in a remodeled protein-protein interface [J].
Atwell, S ;
Ultsch, M ;
DeVos, AM ;
Wells, JA .
SCIENCE, 1997, 278 (5340) :1125-1128
[4]   Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants:: the Keio collection [J].
Baba, Tomoya ;
Ara, Takeshi ;
Hasegawa, Miki ;
Takai, Yuki ;
Okumura, Yoshiko ;
Baba, Miki ;
Datsenko, Kirill A. ;
Tomita, Masaru ;
Wanner, Barry L. ;
Mori, Hirotada .
MOLECULAR SYSTEMS BIOLOGY, 2006, 2 (1) :2006.0008
[5]   A synthetic multicellular system for programmed pattern formation [J].
Basu, S ;
Gerchman, Y ;
Collins, CH ;
Arnold, FH ;
Weiss, R .
NATURE, 2005, 434 (7037) :1130-1134
[6]  
Berg J.M., 2015, Oxidative Phosphorylation, Veight
[7]   Evolving strategies for enzyme engineering [J].
Bloom, JD ;
Meyer, MM ;
Meinhold, P ;
Otey, CR ;
MacMillan, D ;
Arnold, FH .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2005, 15 (04) :447-452
[8]   Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products:: Homoacetate production [J].
Causey, TB ;
Zhou, S ;
Shanmugam, KT ;
Ingram, LO .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (03) :825-832
[9]   Biochemical and molecular characterization of α-ketoisovalerate decarboxylase, an enzyme involved in the formation of aldehydes from amino acids by Lactococcus lactis [J].
de la Plaza, M ;
de Palencia, PF ;
Peláez, C ;
Requena, T .
FEMS MICROBIOLOGY LETTERS, 2004, 238 (02) :367-374
[10]   Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT) [J].
Dieterich, Daniela C. ;
Link, A. James ;
Graumann, Johannes ;
Tirrell, David A. ;
Schuman, Erin M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (25) :9482-9487