On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies

被引:91
作者
Zhang, LX [1 ]
机构
[1] UNIV WATERLOO, DEPT COMP SCI, WATERLOO, ON N2L 3G1, CANADA
关键词
D O I
10.1089/cmb.1997.4.177
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A conjecture of Mirkin, Muchnik, and Smith is answered affirmatively which connects the inconsistency function, a biologically meaningful similarity/dissimilarity measure for a gene tree and a species tree, to the mutation cost function, a combinatorial measure based on the mapping of trees, A linear-time algorithm for computing the mutation cost function is also derived from the conjecture.
引用
收藏
页码:177 / 187
页数:11
相关论文
共 22 条
[1]   N-TREES AS NESTINGS - COMPLEXITY, SIMILARITY, AND CONSENSUS [J].
ADAMS, EN .
JOURNAL OF CLASSIFICATION, 1986, 3 (02) :299-317
[2]  
Aho A.V., 1974, The Design and Analysis of Computer Algorithms
[3]   ON THE USE OF ORDERED SETS IN PROBLEMS OF COMPARISON AND CONSENSUS OF CLASSIFICATIONS [J].
BARTHELEMY, JP ;
LECLERC, B ;
MONJARDET, B .
JOURNAL OF CLASSIFICATION, 1986, 3 (02) :187-224
[4]  
EULENSTEIN O, 1995, 936 GMD
[5]   DISTINGUISHING HOMOLOGOUS FROM ANALOGOUS PROTEINS [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1970, 19 (02) :99-&
[6]   FITTING THE GENE LINEAGE INTO ITS SPECIES LINEAGE, A PARSIMONY STRATEGY ILLUSTRATED BY CLADOGRAMS CONSTRUCTED FROM GLOBIN SEQUENCES [J].
GOODMAN, M ;
CZELUSNIAK, J ;
MOORE, GW ;
ROMEROHERRERA, AE ;
MATSUDA, G .
SYSTEMATIC ZOOLOGY, 1979, 28 (02) :132-163
[7]   Reconstruction of ancient molecular phylogeny [J].
Guigo, R ;
Muchnik, I ;
Smith, TF .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 1996, 6 (02) :189-213
[8]   FAST ALGORITHMS FOR FINDING NEAREST COMMON ANCESTORS [J].
HAREL, D ;
TARJAN, RE .
SIAM JOURNAL ON COMPUTING, 1984, 13 (02) :338-355
[9]  
He X, 1997, PROCEEDINGS OF THE EIGHTH ANNUAL ACM-SIAM SYMPOSIUM ON DISCRETE ALGORITHMS, P427
[10]   COMPARING TREES WITH PENDANT VERTICES LABELED [J].
HENDY, MD ;
LITTLE, CHC ;
PENNY, D .
SIAM JOURNAL ON APPLIED MATHEMATICS, 1984, 44 (05) :1054-1065