Isolation and characterization of a novel violacein-like pigment producing psychrotrophic bacterial species Janthinobacterium svalbardensis sp nov

被引:41
作者
Avgustin, Jerneja Ambrozic [1 ]
Bertok, Darja Zgur [1 ]
Kostanjsek, Rok [2 ]
Avgustin, Gorazd [3 ]
机构
[1] Univ Ljubljana, Biotech Fac, Dept Biol, Chair Mol Genet & Biol Microorganisms, Ljubljana 1000, Slovenia
[2] Univ Ljubljana, Dept Biol, Chair Zool, Biotech Fac, Ljubljana 1000, Slovenia
[3] Univ Ljubljana, Biotech Fac, Dept Anim Sci, Chair Microbiol & Microbial Biotechnol, Domzale 1230, Slovenia
来源
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY | 2013年 / 103卷 / 04期
关键词
Psychrotrophic bacterium; Janthinobacterium svalbardensis sp nov; Violacein-like pigment; DEOXYRIBONUCLEIC-ACID; DNA HYBRIDIZATION;
D O I
10.1007/s10482-012-9858-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A bacterial strain designated JA-1, related to Janthinobacterium lividum, was isolated from glacier ice samples from the island Spitsbergen in the Arctic. The strain was tested for phenotypic traits and the most prominent appeared to be the dark red brown to black pigmentation different from the violet pigment of Janthinobacterium, Chromobacterium and Iodobacter. Phylogenetic analysis based on 16S rRNA gene sequences and DNA-DNA hybridization tests showed that strain JA-1 belongs to the genus Janthinobacterium but represents a novel lineage distinct from the two known species of this genus, J. lividum and Janthinobacterium agaricidamnosum. The DNA G + C content of strain JA-1 was determined to be 62.3 mol %. The isolate is a psychrotrophic Gram negative bacterium, rod-shaped with rounded ends, containing intracellular inclusions and one polar flagellum. On the basis of the presented results strain JA-1 is proposed as the type strain of a novel species of the genus Janthinobacterium, for which the name Janthinobacterium svalbardensis sp. nov. is proposed (JA-1(T) = DSM 25734, ZIM B637).
引用
收藏
页码:763 / 769
页数:7
相关论文
共 25 条
[1]  
Ausubel F.M., 1992, Current protocols in molecular biology, V1
[2]   FLAVOBACTERIA AS INTRACELLULAR SYMBIONTS IN COCKROACHES [J].
BANDI, C ;
DAMIANI, G ;
MAGRASSI, L ;
GRIGOLO, A ;
FANI, R ;
SACCHI, L .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1994, 257 (1348) :43-48
[3]   RAPID METHOD FOR BASE RATIO DETERMINATION OF BACTERIAL DNA [J].
CASHION, P ;
HOLDERFRANKLIN, MA ;
MCCULLY, J ;
FRANKLIN, M .
ANALYTICAL BIOCHEMISTRY, 1977, 81 (02) :461-466
[4]  
Clinical and Laboratory Standards Institute (CLSI), 2007, M100S17 CLSI
[5]  
DELEY J, 1970, EUR J BIOCHEM, V12, P133
[6]   INTRAGENERIC AND INTERGENERIC SIMILARITIES OF CHROMOBACTERIUM AND JANTHINOBACTERIUM RIBOSOMAL RIBONUCLEIC-ACID CISTRONS [J].
DELEY, J ;
SEGERS, P ;
GILLIS, M .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1978, 28 (02) :154-168
[7]  
Eisenberg J, 1891, BACTERIOLOGISCHE DIA
[8]   Extremophilic fungi in arctic ice: a relationship between adaptation to low temperature and water activity [J].
Gunde-Cimerman, N ;
Sonjak, S ;
Zalar, P ;
Frisvad, JC ;
Diderichsen, B ;
Plemenitas, A .
PHYSICS AND CHEMISTRY OF THE EARTH, 2003, 28 (28-32) :1273-1278
[9]   STUDIES ON THE SPECTROPHOTOMETRIC DETERMINATION OF DNA HYBRIDIZATION FROM RENATURATION RATES [J].
HUSS, VAR ;
FESTL, H ;
SCHLEIFER, KH .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 1983, 4 (02) :184-192
[10]   FATTY-ACIDS, ANTIBIOTIC-RESISTANCE, AND DEOXYRIBONUCLEIC-ACID HOMOLOGY GROUPS OF BRADYRHIZOBIUM-JAPONICUM [J].
KUYKENDALL, LD ;
ROY, MA ;
ONEILL, JJ ;
DEVINE, TE .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1988, 38 (04) :358-361