Individual variability in response to clopidogrel is known but its mechanism is poorly understood.We examined the relationship between glycoprotein Ilia polymorphism Pl(A1/A1) and anti-thrombotic actions of clopidogrel. Clopidogrel (75 mg/d; 2 weeks) was administered to 48 normolipemic patients with coronary artery disease. Bleeding time,thrombin generation at the site of microvascular injury, platelet function under high shear, using PFA-100 with ADP cartridge, and platelet surface activation markers (P-selectin and fibrinogen binding sites on GPIIb/IIIa complex detected by PAC-I antibody), were studied both before and after clopidogrel treatment. Both unstimulated and low-dose (0.02 mu M and 1 mu M) in vitroADP-stimulated platelets were examined. GP Ilia polymorphism was assessed by polymerase chain reaction and restriction fragment length polymorphism analysis. We identified 32 Pl(A1/A1) homozygotes, 15 Pl(A1/A2) heterozygotes and one Pl(A2/A2) homozygote. Clopidogrel significantly prolonged bleeding time in all subjects, but this effect was greater in Pl(A2) carriers (p < 0.01). Furthermore, clopidogrel only depressed thrombin generation at the site of microvascular injury (p < 0.01) in Pl(A2) patients and prolonged closure time measured in vitro by PFA-100 (p < 0.05).At baseline spontaneous expression of PAC-1 and P-selectin was higher in Pl(A2) subjects as compared to Pl(A1) homozygotes (p < 0.05 for both antigens). Clopidogrel lowered the expression of both markers affecting more Pl(A2) carriers, so that the difference in binding PAC-1 antibody between platelets from Pl(A1) and Pl(A2) carriers disappeared, while the difference in P-selectin expression slightly diminished. Anti-thrombotic effects of clopidogrel are more pronounced in CAD patients carrying the pl(A2) allele than in Pl(A1) homozygotes.