The Synergizer service for translating gene, protein and other biological identifiers

被引:35
作者
Berriz, Gabriel F. [1 ]
Roth, Frederick P. [1 ,2 ]
机构
[1] Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
[2] Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1093/bioinformatics/btn424
中图分类号
Q5 [生物化学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
The Synergizer is a database and web service that provides translations of biological database identifiers. It is accessible both programmatically and interactively.
引用
收藏
页码:2272 / 2273
页数:2
相关论文
共 9 条
[1]
BUSSEY KJ, 2003, GENOME RES, V4, P1
[2]
The Protein Identifier Cross-Referencing (PICR) service:: reconciling protein identifiers across multiple source databases [J].
Cote, Richard G. ;
Jones, Philip ;
Martens, Lennart ;
Kerrien, Samuel ;
Reisinger, Florian ;
Lin, Quan ;
Leinonen, Rasko ;
Apweiler, Rolf ;
Hermjakob, Henning .
BMC BIOINFORMATICS, 2007, 8 (1) :401
[3]
Babel's tower revisited: a universal resource for cross-referencing across annotation databases [J].
Draghici, Sorin ;
Sellamuthu, Sivakumar ;
Khatri, Purvesh .
BIOINFORMATICS, 2006, 22 (23) :2934-2939
[4]
Integration of bioinformatics resources for functional analysis of gene expression and proteomic data [J].
Huang, Hongzhan ;
Hu, Zhang-Zhi ;
Arighi, Cecilia N. ;
Wu, Cathy H. .
FRONTIERS IN BIOSCIENCE-LANDMARK, 2007, 12 :5071-5088
[5]
The Ensembl genome database project [J].
Hubbard, T ;
Barker, D ;
Birney, E ;
Cameron, G ;
Chen, Y ;
Clark, L ;
Cox, T ;
Cuff, J ;
Curwen, V ;
Down, T ;
Durbin, R ;
Eyras, E ;
Gilbert, J ;
Hammond, M ;
Huminiecki, L ;
Kasprzyk, A ;
Lehvaslaiho, H ;
Lijnzaad, P ;
Melsopp, C ;
Mongin, E ;
Pettett, R ;
Pocock, M ;
Potter, S ;
Rust, A ;
Schmidt, E ;
Searle, S ;
Slater, G ;
Smith, J ;
Spooner, W ;
Stabenau, A ;
Stalker, J ;
Stupka, E ;
Ureta-Vidal, A ;
Vastrik, I ;
Clamp, M .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :38-41
[6]
AliasServer:: a web server to handle multiple aliases used to refer to proteins [J].
Iragne, F ;
Barré, A ;
Goffard, N ;
de Daruvar, A .
BIOINFORMATICS, 2004, 20 (14) :2331-2332
[7]
EnsMart: A generic system for fast and flexible access to biological data [J].
Kasprzyk, A ;
Keefe, D ;
Smedley, D ;
London, D ;
Spooner, W ;
Melsopp, C ;
Hammond, M ;
Rocca-Serra, P ;
Cox, T ;
Birney, E .
GENOME RESEARCH, 2004, 14 (01) :160-169
[8]
g:Profiler -: a web-based toolset for functional profiling of gene lists from large-scale experiments [J].
Reimand, Jueri ;
Kull, Meelis ;
Peterson, Hedi ;
Hansen, Jaanus ;
Vilo, Jaak .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W193-W200
[9]
Database resources of the national center for biotechnology information [J].
Wheeler, David L. ;
Barrett, Tanya ;
Benson, Dennis A. ;
Bryant, Stephen H. ;
Canese, Kathi ;
Chetvernin, Vyacheslav ;
Church, Deanna M. ;
DiCuccio, Michael ;
Edgar, Ron ;
Federhen, Scott ;
Feolo, Michael ;
Geer, Lewis Y. ;
Helmberg, Wolfgang ;
Kapustin, Yuri ;
Khovayko, Oleg ;
Landsman, David ;
Lipman, David J. ;
Madden, Thomas L. ;
Maglott, Donna R. ;
Miller, Vadim ;
Ostell, James ;
Pruitt, Kim D. ;
Schuler, Gregory D. ;
Shumway, Martin ;
Sequeira, Edwin ;
Sherry, Steven T. ;
Sirotkin, Karl ;
Souvorov, Alexandre ;
Starchenko, Grigory ;
Tatusov, Roman L. ;
Tatusova, Tatiana A. ;
Wagner, Lukas ;
Yaschenko, Eugene .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D13-D21