Human Connectome Project informatics: Quality control, database services, and data visualization

被引:296
作者
Marcus, Daniel S. [1 ]
Harms, Michael P. [2 ]
Snyder, Abraham Z. [1 ]
Jenkinson, Mark [3 ]
Wilson, J. Anthony [1 ]
Glasser, Matthew F. [4 ]
Barch, Deanna M. [2 ]
Archie, Kevin A. [1 ]
Burgess, Gregory C. [2 ]
Ramaratnam, Mohana [5 ]
Hodge, Michael [1 ]
Horton, William [1 ]
Herrick, Rick [1 ]
Olsen, Timothy [6 ]
McKay, Michael [1 ]
House, Matthew [1 ]
Hileman, Michael [1 ]
Reid, Erin [4 ]
Harwell, John [4 ]
Coalson, Timothy [4 ]
Schindler, Jon [4 ]
Elam, Jennifer S. [4 ]
Curtiss, Sandra W. [4 ]
Van Essen, David C. [4 ]
机构
[1] Washington Univ, Sch Med, Dept Radiol, St Louis, MO 63110 USA
[2] Washington Univ, Sch Med, Dept Psychiat, St Louis, MO 63110 USA
[3] Univ Oxford, John Radcliffe Hosp, Oxford Ctr Funct Magnet Resonance Imaging Brain, Oxford OX3 9DU, England
[4] Washington Univ, Sch Med, Dept Anat & Neurobiol, St Louis, MO 63110 USA
[5] NRG India, Pune, Maharashtra, India
[6] Deck5 Consulting, Normal, IL USA
关键词
FUNCTIONAL CONNECTIVITY; PHYSIOLOGICAL NOISE; 7; T; MRI; FMRI; BRAIN; VALIDATION; NETWORKS; IMPACT; MOTION;
D O I
10.1016/j.neuroimage.2013.05.077
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
The Human Connectome Project (HCP) has developed protocols, standard operating and quality control procedures, and a suite of informatics tools to enable high throughput data collection, data sharing, automated data processing and analysis, and data mining and visualization. Quality control procedures include methods to maintain data collection consistency over time, to measure head motion, and to establish quantitative modality-specific overall quality assessments. Database services developed as customizations of the XNAT imaging informatics platform support both internal daily operations and open access data sharing. The Connectome Workbench visualization environment enables user interaction with HCP data and is increasingly integrated with the HCP's database services. Here we describe the current state of these procedures and tools and their application in the ongoing HCP study. (C) 2013 Elsevier Inc. All rights reserved.
引用
收藏
页码:202 / 219
页数:18
相关论文
共 31 条
[1]  
Aspera, 2013, ASP FASP HIGH SPEED
[2]   Function in the human connectome: Task-fMRI and individual differences in behavior [J].
Barch, Deanna M. ;
Burgess, Gregory C. ;
Harms, Michael P. ;
Petersen, Steven E. ;
Schlaggar, Bradley L. ;
Corbetta, Maurizio ;
Glasser, Matthew F. ;
Curtiss, Sandra ;
Dixit, Sachin ;
Feldt, Cindy ;
Nolan, Dan ;
Bryant, Edward ;
Hartley, Tucker ;
Footer, Owen ;
Bjork, James M. ;
Poldrack, Russ ;
Smith, Steve ;
Johansen-Berg, Heidi ;
Snyder, Abraham Z. ;
Van Essen, David C. .
NEUROIMAGE, 2013, 80 :169-189
[3]   Investigations into resting-state connectivity using independent component analysis [J].
Beckmann, CF ;
DeLuca, M ;
Devlin, JT ;
Smith, SM .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1457) :1001-1013
[4]   FUNCTIONAL CONNECTIVITY IN THE MOTOR CORTEX OF RESTING HUMAN BRAIN USING ECHO-PLANAR MRI [J].
BISWAL, B ;
YETKIN, FZ ;
HAUGHTON, VM ;
HYDE, JS .
MAGNETIC RESONANCE IN MEDICINE, 1995, 34 (04) :537-541
[5]   Mapping the MRI voxel volume in which thermal noise matches physiological noise-Implications for fMRI [J].
Bodurka, J. ;
Ye, F. ;
Petridou, N. ;
Murphy, K. ;
Bandettini, P. A. .
NEUROIMAGE, 2007, 34 (02) :542-549
[6]   Report on a multicenter fMRI quality assurance protocol [J].
Friedman, L ;
Glover, GH .
JOURNAL OF MAGNETIC RESONANCE IMAGING, 2006, 23 (06) :827-839
[7]   The minimal preprocessing pipelines for the Human Connectome Project [J].
Glasser, Matthew F. ;
Sotiropoulos, Stamatios N. ;
Wilson, J. Anthony ;
Coalson, Timothy S. ;
Fischl, Bruce ;
Andersson, Jesper L. ;
Xu, Junqian ;
Jbabdi, Saad ;
Webster, Matthew ;
Polimeni, Jonathan R. ;
Van Essen, David C. ;
Jenkinson, Mark .
NEUROIMAGE, 2013, 80 :105-124
[8]   Function biomedical informatics research network recommendations for prospective multicenter functional MRI studies [J].
Glover, Gary H. ;
Mueller, Bryon A. ;
Turner, Jessica A. ;
van Erp, Theo G. M. ;
Liu, Thomas T. ;
Greve, Douglas N. ;
Voyvodic, James T. ;
Rasmussen, Jerod ;
Brown, Gregory G. ;
Keator, David B. ;
Calhoun, Vince D. ;
Lee, Hyo Jong ;
Ford, Judith M. ;
Mathalon, Daniel H. ;
Diaz, Michele ;
O'Leary, Daniel S. ;
Gadde, Syam ;
Preda, Adrian ;
Lim, Kelvin O. ;
Wible, Cynthia G. ;
Stern, Hal S. ;
Belger, Aysenil ;
McCarthy, Gregory ;
Ozyurt, Burak ;
Potkin, Steven G. .
JOURNAL OF MAGNETIC RESONANCE IMAGING, 2012, 36 (01) :39-54
[9]   A Novel Method for Quantifying Scanner Instability in fMRI [J].
Greve, Douglas N. ;
Mueller, Bryon A. ;
Liu, Thomas ;
Turner, Jessica A. ;
Voyvodic, James ;
Yetter, Elizabeth ;
Diaz, Michele ;
McCarthy, Gregory ;
Wallace, Stuart ;
Roach, Brian J. ;
Ford, Judy M. ;
Mathalon, Daniel H. ;
Calhoun, Vince D. ;
Wible, Cynthia G. ;
Brown, Gregory G. ;
Potkin, Steven G. ;
Glover, Gary .
MAGNETIC RESONANCE IN MEDICINE, 2011, 65 (04) :1053-1061
[10]   Computerized neurocognitive scanning: I. Methodology and validation in healthy people [J].
Gur, RC ;
Ragland, JD ;
Moberg, PJ ;
Turner, TH ;
Bilker, WB ;
Kohler, C ;
Siegel, SJ ;
Gur, RE .
NEUROPSYCHOPHARMACOLOGY, 2001, 25 (05) :766-776