The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience

被引：132

作者：

Gardner, Daniel ^{[1
,2
]}

Akil, Huda ^{[3
]}

Ascoli, Giorgio A. ^{[4
,5
]}

Bowden, Douglas M. ^{[6
]}

Bug, William ^{[7
]}

Donohue, Duncan E. ^{[4
,5
]}

Goldberg, David H. ^{[1
,2
]}

Grafstein, Bernice ^{[1
,2
]}

Grethe, Jeffrey S. ^{[7
]}

Gupta, Amarnath ^{[8
]}

Halavi, Maryam ^{[4
,5
]}

Kennedy, David N. ^{[9
,10
]}

Marenco, Luis ^{[11
,12
]}

Martone, Maryann E. ^{[7
]}

Miller, Perry L. ^{[11
,12
]}

Mueller, Hans-Michael ^{[13
,14
]}

Robert, Adrian ^{[1
,2
]}

Shepherd, Gordon M. ^{[11
,12
]}

Sternberg, Paul W. ^{[13
,14
]}

Van Essen, David C. ^{[15
]}

Williams, Robert W. ^{[16
,17
]}

机构：

[1] Cornell Univ, Weill Med Coll, Lab Neuroinformat, New York, NY 10065 USA

[2] Cornell Univ, Weill Med Coll, Dept Physiol, New York, NY 10065 USA

[3] Univ Michigan, Ann Arbor, MI 48109 USA

[4] George Mason Univ, Krasnow Inst Adv Study, Ctr Neural Informat Struct & Plast, Fairfax, VA 22030 USA

[5] George Mason Univ, Krasnow Inst Adv Study, Mol Neurosci Dept, Fairfax, VA 22030 USA

[6] Univ Washington, Natl Primate Res Ctr, Seattle, WA 98195 USA

[7] Univ Calif San Diego, Dept Neurosci, San Diego, CA 92093 USA

[8] Univ Calif San Diego, San Diego Supercomp Ctr, San Diego, CA 92093 USA

[9] Harvard Univ, Sch Med, Dept Neurol, Boston, MA 02129 USA

[10] Harvard Univ, Sch Med, Dept Radiol, Boston, MA 02129 USA

[11] Yale Univ, Sch Med, Dept Neurobiol, New Haven, CT 06510 USA

[12] Yale Univ, Sch Med, Yale Ctr Med Informat, New Haven, CT 06510 USA

[13] CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA

[14] CALTECH, Div Biol, Pasadena, CA 91125 USA

[15] Washington Univ, Sch Med, Dept Anat & Neurobiol, St Louis, MO 63110 USA

[16] Univ Tennessee, Hlth Sci Ctr, Dept Anat & Neurobiol, Memphis, TN 38163 USA

[17] Univ Tennessee, Hlth Sci Ctr, Dept Pediat, Memphis, TN 38163 USA

来源：

NEUROINFORMATICS | 2008年 / 6卷 / 03期

关键词：

Neurodatabases; Data sharing; Terminologies; Portals;

D O I：

10.1007/s12021-008-9024-z

中图分类号：

TP39 [计算机的应用];

学科分类号：

081203 ; 0835 ;

摘要：

With support from the Institutes and Centers forming the NIH Blueprint for Neuroscience Research, we have designed and implemented a new initiative for integrating access to and use of Web-based neuroscience resources: the Neuroscience Information Framework. The Framework arises from the expressed need of the neuroscience community for neuroinformatic tools and resources to aid scientific inquiry, builds upon prior development of neuroinformatics by the Human Brain Project and others, and directly derives from the Society for Neuroscience's Neuroscience Database Gateway. Partnered with the Society, its Neuroinformatics Committee, and volunteer consultant-collaborators, our multi-site consortium has developed: (1) a comprehensive, dynamic, inventory of Web-accessible neuroscience resources, (2) an extended and integrated terminology describing resources and contents, and (3) a framework accepting and aiding concept-based queries. Evolving instantiations of the Framework may be viewed at http://nif.nih.gov, http://neurogateway.org, and other sites as they come on line.

引用

页码：149 / 160

页数：12

共 23 条

[1] The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience [J].

Bug, William J. ;

Ascoli, Giorgio A. ;

Grethe, Jeffrey S. ;

Gupta, Amarnath ;

Fennema-Notestine, Christine ;

Laird, Angela R. ;

Larson, Stephen D. ;

Rubin, Daniel ;

Shepherd, Gordon M. ;

Turner, Jessica A. ;

Martone, Maryann E. .

NEUROINFORMATICS, 2008, 6 (03) :175-194

[2] On the future of the human brain project [J].

De Schutter, Erik ;

Ascoli, Giorgio A. ;

Kennedy, David N. .

NEUROINFORMATICS, 2006, 4 (02) :129-130

[3] A gateway to the future of neuroinformatics [J].

Gardner, D ;

Shepherd, GM .

NEUROINFORMATICS, 2004, 2 (03) :271-274

[4] Neurodatabase.org: networking the microelectrode [J].

Gardner, D .

NATURE NEUROSCIENCE, 2004, 7 (05) :486-487

[5] Towards effective and rewarding data sharing [J].

Gardner, D ;

Toga, AW ;

Ascoli, GA ;

Beatty, JT ;

Brinkley, JF ;

Dale, AM ;

Fox, PT ;

Gardner, EP ;

George, JS ;

Goddard, N ;

Harris, KM ;

Herskovits, EH ;

Hines, ML ;

Jacobs, GA ;

Jacobs, RE ;

Jones, EG ;

Kennedy, DN ;

Kimberg, DY ;

Mazziotta, JC ;

Miller, PL ;

Mori, S ;

Mountain, DC ;

Reiss, AL ;

Rosen, GD ;

Rottenberg, DA ;

Shepherd, GM ;

Smalheiser, NR ;

Smith, KP ;

Strachan, T ;

Van Essen, DC ;

Williams, RW ;

Wong, STC .

NEUROINFORMATICS, 2003, 1 (03) :289-295

[6] Common data model for neuroscience data and data model exchange [J].

Gardner, D ;

Knuth, KH ;

Abato, M ;

Erde, SM ;

White, T ;

DeBellis, R ;

Gardner, EP .

JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2001, 8 (01) :17-33

[7]

GARDNER D, 2005, DATABASING BRAIN DAT, P47

[8] Terminology for Neuroscience Data Discovery: Multi-tree Syntax and Investigator-Derived Semantics [J].

Gardner, Daniel ;

Goldberg, David H. ;

Grafstein, Bernice ;

Robert, Adrian ;

Gardner, Esther P. .

NEUROINFORMATICS, 2008, 6 (03) :161-174

[9] Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF) [J].

Gupta, Amarnath ;

Bug, William ;

Marenco, Luis ;

Qian, Xufei ;

Condit, Christopher ;

Rangarajan, Arun ;

Mueller, Hans Michael ;

Miller, Perry L. ;

Sanders, Brian ;

Grethe, Jeffrey S. ;

Astakhov, Vadim ;

Shepherd, Gordon ;

Sternberg, Paul W. ;

Martone, Maryann E. .

NEUROINFORMATICS, 2008, 6 (03) :205-217

[10] NeuroMorpho.Org Implementation of Digital Neuroscience: Dense Coverage and Integration with the NIF [J].

Halavi, Maryam ;

Polavaram, Sridevi ;

Donohue, Duncan E. ;

Hamilton, Gail ;

Hoyt, Jeffrey ;

Smith, Kenneth P. ;

Ascoli, Giorgio A. .

NEUROINFORMATICS, 2008, 6 (03) :241-252

← 1 2 3 →