Rice Cluster I methanogens, an important group of Archaea producing greenhouse gas in soil

被引:86
作者
Conrad, Ralf [1 ]
Erkel, Christoph [1 ]
Liesack, Werner [1 ]
机构
[1] Max Planck Inst Terr Microbiol, D-35043 Marburg, Germany
关键词
D O I
10.1016/j.copbio.2006.04.002
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Methane, which is an important greenhouse gas, is to a large part produced by methanogenic archaea in anoxic soils and sediments. Rice Cluster I methanogens have been characterized on the basis of their 16S rRNA and mcrA gene sequences, and were found to form a separate lineage within the phylogenetic radiation of Methanosarcinales and Methanomicrobiales. As isolation has not been achieved until recently, our knowledge of distribution, physiology and environmental significance of Rice Cluster I is solely based on molecular biology techniques. Rice Cluster I seems to be widely distributed, particularly in rice fields, possibly occupying different niches among the methane producers. One niche seems to be methane production on roots driven by plant photosynthesis, contributing substantially to the release of methane from rice fields into the atmosphere.
引用
收藏
页码:262 / 267
页数:6
相关论文
共 43 条
[21]   Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization [J].
Jurgens, G ;
Glöckner, FO ;
Amann, R ;
Saano, A ;
Montonen, L ;
Likolammi, M ;
Münster, U .
FEMS MICROBIOLOGY ECOLOGY, 2000, 34 (01) :45-56
[22]   Community analysis of methanogenic archaea within a riparian flooding gradient [J].
Kemnitz, D ;
Chin, KJ ;
Bodelier, P ;
Conrad, R .
ENVIRONMENTAL MICROBIOLOGY, 2004, 6 (05) :449-461
[23]   Depth-related change in archaeal community structure in a freshwater lake sediment as determined with denaturing gradient gel electrophoresis of amplified 16S rRNA genes and reversely transcribed rRNA fragments [J].
Koizumi, Y ;
Takii, S ;
Fukui, M .
FEMS MICROBIOLOGY ECOLOGY, 2004, 48 (02) :285-292
[24]   Activity, structure and dynamics of the methanogenic archaeal community in a flooded Italian rice field [J].
Krüger, M ;
Frenzel, P ;
Kemnitz, D ;
Conrad, R .
FEMS MICROBIOLOGY ECOLOGY, 2005, 51 (03) :323-331
[25]   Methanogen flora of paddy soils in Japan [J].
Kudo, Y ;
Nakajima, T ;
Miyaki, T ;
Oyaizu, H .
FEMS MICROBIOLOGY ECOLOGY, 1997, 22 (01) :39-48
[26]   Changing concentration, lifetime and climate forcing of atmospheric methane [J].
Lelieveld, J ;
Crutzen, PJ ;
Dentener, FJ .
TELLUS SERIES B-CHEMICAL AND PHYSICAL METEOROLOGY, 1998, 50 (02) :128-150
[27]   In situ stable isotope probing of methanogenic archaea in the rice rhizosphere [J].
Lu, YH ;
Conrad, R .
SCIENCE, 2005, 309 (5737) :1088-1090
[28]   Detecting active methanogenic populations on rice roots using stable isotope probing [J].
Lu, YH ;
Lueders, T ;
Friedrich, MW ;
Conrad, R .
ENVIRONMENTAL MICROBIOLOGY, 2005, 7 (03) :326-336
[29]   Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts [J].
Lueders, T ;
Friedrich, MW .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (01) :320-326
[30]   Stable-isotope probing of microorganisms thriving at thermodynamic limits: Syntrophic propionate oxidation in flooded soil [J].
Lueders, T ;
Pommerenke, B ;
Friedrich, MW .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 70 (10) :5778-5786