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BioThesaurus: a web-based thesaurus of protein and gene names

被引：80
作者：
Liu, HF
Hu, ZZ
Zhang, J
Wu, C
机构：
[1] Univ Maryland Baltimore Cty, Dept Informat Syst, Baltimore, MD 21250 USA
[2] Georgetown Univ, Ctr Med, Dept Biochem & Mol Biol, Washington, DC USA
来源：
BIOINFORMATICS | 2006年 / 22卷 / 01期
关键词：
D O I：
10.1093/bioinformatics/bti749
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
BioThesaurus is a web-based system designed to map a comprehensive collection of protein and gene names to protein entries in the UniProt Knowledgebase. Currently covering more than two million proteins, BioThesaurus consists of over 2.8 million names extracted from multiple molecular biological databases according to the database cross-references in iProClass. The BioThesaurus web site allows the retrieval of synonymous names of given protein entries and the identification of protein entries sharing the same names.
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页码：103 / 105
页数：3
相关论文
共 19 条
  • [1] The universal protein resource (UniProt)
    Bairoch, A
    Apweiler, R
    Wu, CH
    Barker, WC
    Boeckmann, B
    Ferro, S
    Gasteiger, E
    Huang, HZ
    Lopez, R
    Magrane, M
    Martin, MJ
    Natale, DA
    O'Donovan, C
    Redaschi, N
    Yeh, LSL
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D154 - D159
  • [2] The Unified Medical Language System (UMLS): integrating biomedical terminology
    Bodenreider, O
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D267 - D270
  • [3] A computational biology database digest:: Data, data analysis, and data management
    Bry, F
    Kröger, P
    [J]. DISTRIBUTED AND PARALLEL DATABASES, 2003, 13 (01) : 7 - 42
  • [4] WormBase:: a comprehensive data resource for Caenorhabditis biology and genomics
    Chen, NS
    Harris, TW
    Antoshechkin, I
    Bastiani, C
    Bieri, T
    Blasiar, D
    Bradnam, K
    Canaran, P
    Chan, J
    Chen, CK
    Chen, WJ
    Cunningham, F
    Davis, P
    Kenny, E
    Kishore, R
    Lawson, D
    Lee, R
    Muller, HM
    Nakamura, C
    Pai, S
    Ozersky, P
    Petcherski, A
    Rogers, A
    Sab, A
    Schwarz, EM
    Van Auken, K
    Wang, QH
    Durbin, R
    Spieth, J
    Sternberg, PW
    Stein, LD
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D383 - D389
  • [5] Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
    Christie, KR
    Weng, S
    Balakrishnan, R
    Costanzo, MC
    Dolinski, K
    Dwight, SS
    Engel, SR
    Feierbach, B
    Fisk, DG
    Hirschman, JE
    Hong, EL
    Issel-Tarver, L
    Nash, R
    Sethuraman, A
    Starr, B
    Theesfeld, CL
    Andrada, R
    Binkley, G
    Dong, Q
    Lane, C
    Schroeder, M
    Botstein, D
    Cherry, JM
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D311 - D314
  • [6] The Rat Genome Database (RGD): developments towards a phenome database
    de la Cruz, N
    Bromberg, S
    Pasko, D
    Shimoyama, M
    Twigger, S
    Chen, JL
    Chen, CF
    Fan, C
    Foote, C
    Gopinath, GR
    Harris, G
    Hughes, A
    Ji, Y
    Jin, WH
    Li, DW
    Mathis, J
    Nenasheva, N
    Nie, J
    Nigam, R
    Petri, V
    Reilly, D
    Wang, WY
    Wu, WH
    Zuniga-Meyer, A
    Zhao, L
    Kwitek, A
    Tonellato, P
    Jacob, H
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D485 - D491
  • [7] FlyBase: genes and gene models
    Drysdale, RA
    Crosby, MA
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D390 - D395
  • [8] The Mouse Genome Database (MGD): from genes to mice - a community resource for mouse biology
    Eppig, JT
    Bult, CJ
    Kadin, JA
    Richardson, JE
    Blake, JA
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D471 - D475
  • [9] Enzyme nomenclature: Functional or structural?
    Gegenheimer, P
    [J]. RNA, 2000, 6 (12) : 1695 - 1697
  • [10] Hanisch Daniel, 2003, Pac Symp Biocomput, P403
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