The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes

被引:250
作者
Godde, James S. [1 ]
Bickerton, Amanda [1 ]
机构
[1] Monmouth Coll, Dept Biol, Monmouth, IL 61462 USA
关键词
repetitive DNA; mobile genetic elements; lateral gene transfer;
D O I
10.1007/s00239-005-0223-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have found direct DNA repeats 21-47 bp in length interspersed with nonrepetitive sequences of similar length, or clustered regularly interspaced short palindromic repeats (CRISPRs) in a wide range of diverse prokaryotes, including many Archaeal and Eubacterial species. A number of cas, CRISPR-associated genes have also been characterized in many of the same organisms. Phylogenetic analysis of these cas genes suggests that the CRISPR loci have been propagated via HGT, horizontal gene transfer. We suggest a mechanism by which this HGT has occurred, namely, that the CRISPR loci can be carried between cells on megaplasmids >= 40 kb in length.
引用
收藏
页码:718 / 729
页数:12
相关论文
共 15 条
[1]   Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin [J].
Bolotin, A ;
Ouinquis, B ;
Sorokin, A ;
Ehrlich, SD .
MICROBIOLOGY-SGM, 2005, 151 :2551-2561
[2]   A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes [J].
Haft, DH ;
Selengut, J ;
Mongodin, EF ;
Nelson, KE .
PLOS COMPUTATIONAL BIOLOGY, 2005, 1 (06) :474-483
[3]   The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough [J].
Heidelberg, JF ;
Seshadri, R ;
Haveman, SA ;
Hemme, CL ;
Paulsen, IT ;
Kolonay, JF ;
Eisen, JA ;
Ward, N ;
Methe, B ;
Brinkac, LM ;
Daugherty, SC ;
Deboy, RT ;
Dodson, RJ ;
Durkin, AS ;
Madupu, R ;
Nelson, WC ;
Sullivan, SA ;
Fouts, D ;
Haft, DH ;
Selengut, J ;
Peterson, JD ;
Davidsen, TM ;
Zafar, N ;
Zhou, LW ;
Radune, D ;
Dimitrov, G ;
Hance, M ;
Tran, K ;
Khouri, H ;
Gill, J ;
Utterback, TR ;
Feldblyum, TV ;
Wall, JD ;
Voordouw, G ;
Fraser, CM .
NATURE BIOTECHNOLOGY, 2004, 22 (05) :554-559
[4]   The genome sequence of the extreme thermophile Thermus thermophilus [J].
Henne, A ;
Brüggemann, H ;
Raasch, C ;
Wiezer, A ;
Hartsch, T ;
Liesegang, H ;
Johann, A ;
Lienard, T ;
Gohl, O ;
Martinez-Arias, R ;
Jacobi, C ;
Starkuviene, V ;
Schlenczeck, S ;
Dencker, S ;
Huber, R ;
Klenk, HP ;
Kramer, W ;
Merkl, R ;
Gottschalk, G ;
Fritz, HJ .
NATURE BIOTECHNOLOGY, 2004, 22 (05) :547-553
[5]   Identification of genes that are associated with DNA repeats in prokaryotes [J].
Jansen, R ;
van Embden, JDA ;
Gaastra, W ;
Schouls, LM .
MOLECULAR MICROBIOLOGY, 2002, 43 (06) :1565-1575
[6]  
Jansen Rund, 2002, OMICS A Journal of Integrative Biology, V6, P23, DOI 10.1089/15362310252780816
[7]   A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis [J].
Makarova, KS ;
Aravind, L ;
Grishin, NV ;
Rogozin, IB ;
Koonin, EV .
NUCLEIC ACIDS RESEARCH, 2002, 30 (02) :482-496
[8]   Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements [J].
Mojica, FJM ;
Díez-Villaseñor, C ;
García-Martínez, J ;
Soria, E .
JOURNAL OF MOLECULAR EVOLUTION, 2005, 60 (02) :174-182
[9]   Biological significance of a family of regularly spaced repeats in the genomes of Archaea, bacteria and mitochondria [J].
Mojica, FJM ;
Díez-Villaseñor, C ;
Soria, E ;
Juez, G .
MOLECULAR MICROBIOLOGY, 2000, 36 (01) :244-246
[10]   DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes [J].
Murray, AE ;
Lies, D ;
Li, G ;
Nealson, K ;
Zhou, J ;
Tiedje, JM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (17) :9853-9858