S/MARt DB: a database on scaffold/matrix attached regions

被引：45

作者：

Liebich, I

Bode, J

Frisch, M

Wingender, E

机构：

[1] GBF, Res Grp Bioinformat, D-38124 Braunschweig, Germany

[2] GBF, Res Grp Epigenom, D-38124 Braunschweig, Germany

[3] Genomatix Software GmbH, D-80339 Munich, Germany

[4] BIOBASE GmbH, D-38304 Wolfenbuttel, Germany

来源：

NUCLEIC ACIDS RESEARCH | 2002年 / 30卷 / 01期

关键词：

D O I：

10.1093/nar/30.1.372

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

S/MARt DB, the S/MAR transaction database, is a relational database covering scaffold/matrix attached regions (S/MARs) and nuclear matrix proteins that are involved in the chromosomal attachment to the nuclear scaffold. The data are mainly extracted from original publications, but a World Wide Web interface for direct submissions is also available. S/MARt DB is closely linked to the TRANSFAC database on transcription factors and their binding sites. It is freely accessible through the World Wide Web (http://transfac.gbf.de/SMARtDB/) for non-profit research.

引用

收藏

页码：372 / 374

页数：3

相关论文

共 21 条

[1] Mitotic stability of an episomal vector containing a human scaffold/matrix-attached region is provided by association with nuclear matrix [J].

Baiker, A ;

Maercker, C ;

Piechaczek, C ;

Schmidt, SBA ;

Bode, J ;

Benham, C ;

Lipps, HJ .

NATURE CELL BIOLOGY, 2000, 2 (03) :182-184

[2] The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 [J].

Bairoch, A ;

Apweiler, R .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :45-48

[3] Interaction of the nuclear matrix-associated region (MAR)-binding proteins, SATB1 and CDP/Cux, with a MAR element (L2a) in an upstream regulatory region of the mouse CD8a gene [J].

Banan, M ;

Rojas, IC ;

Lee, WH ;

King, HL ;

Harriss, JV ;

Kobayashi, R ;

Webb, CF ;

Gottlieb, PD .

JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (29) :18440-18452

[4] Protein Information Resource: a community resource for expert annotation of protein data [J].

Barker, WC ;

Garavelli, JS ;

Hou, ZL ;

Huang, HZ ;

Ledley, RS ;

McGarvey, PB ;

Mewes, HW ;

Orcutt, BC ;

Pfeiffer, F ;

Tsugita, A ;

Vinayaka, CR ;

Xiao, CL ;

Yeh, LSL ;

Wu, C .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :29-32

[5] IDENTIFICATION OF A NUCLEAR PROTEIN MATRIX [J].

BEREZNEY, R ;

COFFEY, DS .

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1974, 60 (04) :1410-1417

[6]

Deppert W, 2000, CRIT REV EUKAR GENE, V10, P45

[7] SEQUENCE-SPECIFIC DNA-BINDING PROTEINS ARE COMPONENTS OF A NUCLEAR MATRIX-ATTACHMENT SITE [J].

DWORETZKY, SI ;

WRIGHT, KL ;

FEY, EG ;

PENMAN, S ;

LIAN, JB ;

STEIN, JL ;

STEIN, GS .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (09) :4178-4182

[8]

Gelbart WM, 1999, NUCLEIC ACIDS RES, V27, P85, DOI 10.1093/nar/27.1.85

[9]

Gelbart WM, 2002, NUCLEIC ACIDS RES, V30, P106

[10] Transcription regulatory regions database (TRRD): its status in 2000 [J].

Kolchanov, NA ;

Podkolodnaya, OA ;

Ananko, EA ;

Ignatieva, EV ;

Stepanenko, IL ;

Kel-Margoulis, OV ;

Kel, AE ;

Merkulova, TI ;

Goryachkovskaya, TN ;

Busygina, TV ;

Kolpakov, FA ;

Podkolodny, NL ;

Naumochkin, AN ;

Korostishevskaya, IM ;

Romashchenko, AG ;

Overton, GC .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :298-301