Bacteroides finegoldii sp nov., isolated from human faeces

被引:42
作者
Bakir, Mohammad Abdul [1 ]
Kitahara, Maki
Sakamoto, Mitsuo
Matsumoto, Mitsuharu
Benno, Yoshimi
机构
[1] RIKEN, BioResource Ctr, Microbe Div, Japan Collect Microorganisms, Wako, Saitama 3510198, Japan
[2] Kyodo Milk Ind Co Ltd, Lab Dairy Sci & Technol, Tokyo 1900182, Japan
关键词
D O I
10.1099/ijs.0.64084-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two strains, 199(T) and 176, of Gram-negative, anaerobic, rod-shaped, non-spore-forming bacteria were isolated during studies of microbiota in human faeces using polyamine-deficient medium. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the isolated strains belonged to the genus Bacteroides. The G + C content (42(.)4-43(.)0 mol%) and major fatty acid composition (anteiso-C-15:0, 31(.)8-36(.)2%) supported the affiliation of the two strains to the genus Bacteroides. 16S rRNA gene sequence similarities with their closest neighbours, Bacteroides thetaiotaomicron and Bactericides ovatus, ranged from 94(.)6 to 96(.)5%. DNA-DNA hybridization and phenotypic analysis showed that the two strains belonged to the same species (DNA-DNA relatedness of 89 %) and were distinct from their close relatives, B. thetaiotaomicron and B. ovatus (< 23 % DNA-DNA relatedness). On the basis of these data, a novel species of the genus Bacteroides, Bacteroides finegoldii sp. nov., is proposed, comprising the designated type strain 199(T) (=jCM 13345 =(T) =DSM 17565(T)) and strain 176 (=JCM 13346).
引用
收藏
页码:931 / 935
页数:5
相关论文
共 28 条
[1]  
[Anonymous], 2002, MacClade 4: analysis of phylogeny and character evolution
[2]   Bacteroides intestinalis sp nov., isolated from human faeces [J].
Bakir, MA ;
Kitahara, M ;
Sakamoto, M ;
Matsumoto, M ;
Benno, Y .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2006, 56 :151-154
[3]   COMPARISON OF FECAL MICROFLORA OF ELDERLY PERSONS IN RURAL AND URBAN AREAS OF JAPAN [J].
BENNO, Y ;
ENDO, K ;
MIZUTANI, T ;
NAMBA, Y ;
KOMORI, T ;
MITSUOKA, T .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1989, 55 (05) :1100-1105
[4]   FLUOROMETRIC DEOXYRIBONUCLEIC ACID DEOXYRIBONUCLEIC ACID HYBRIDIZATION IN MICRODILUTION WELLS AS AN ALTERNATIVE TO MEMBRANE-FILTER HYBRIDIZATION IN WHICH RADIOISOTOPES ARE USED TO DETERMINE GENETIC RELATEDNESS AMONG BACTERIAL STRAINS [J].
EZAKI, T ;
HASHIMOTO, Y ;
YABUUCHI, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1989, 39 (03) :224-229
[5]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[6]   Bacteroides massiliensis sp nov., isolated from blood culture of a newborn [J].
Fenner, L ;
Roux, V ;
Mallet, MN ;
Raoult, D .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2005, 55 :1335-1337
[7]  
Finegold S.M., 1983, HUMAN INTESTINAL MIC, P3
[8]   BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data [J].
Gascuel, O .
MOLECULAR BIOLOGY AND EVOLUTION, 1997, 14 (07) :685-695
[9]   Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods [J].
Hayashi, H ;
Sakamoto, M ;
Benno, Y .
MICROBIOLOGY AND IMMUNOLOGY, 2002, 46 (08) :535-548
[10]  
JOUSIMIESSOMER HR, 2003, MANUAL CLIN MICROBIO, P880