Loop-mediated isothermal amplification assay for rapid detection of common strains of Escherichia coli

被引:211
作者
Hill, Joshua [1 ]
Beriwal, Shilpa [1 ]
Chandra, Ishwad [1 ]
Paul, Vinod K. [2 ]
Kapil, Aarti [3 ]
Singh, Tripti [1 ,5 ]
Wadowsky, Robert M. [4 ]
Singh, Vinita
Goyal, Ankur [1 ]
Jahnukainen, Timo [1 ]
Johnson, James R. [6 ]
Tarr, Phillip I. [7 ,8 ]
Vats, Abhay [1 ]
机构
[1] Childrens Hosp Pittsburgh, Dept Pediat, Pittsburgh, PA 15213 USA
[2] All India Inst Med Sci, Dept Pediat, New Delhi 110029, India
[3] All India Inst Med Sci, Dept Microbiol, New Delhi 110029, India
[4] Childrens Hosp Pittsburgh, Dept Pathol, Pittsburgh, PA 15213 USA
[5] Atharva BioSci, Dept Mol Diagnost, New Delhi 110029, India
[6] Univ Minnesota, Dept Med, Vet Affairs Med Ctr, VA Med Ctr, Minneapolis, MN 55417 USA
[7] Washington Univ, Sch Med, Dept Mol Microbiol, St Louis, MO 63110 USA
[8] Washington Univ, Sch Med, Dept Pediat, St Louis, MO 63110 USA
关键词
D O I
10.1128/JCM.00152-08
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We developed a highly sensitive and specific LAMP assay for Escherichia coli. It does not require DNA extraction and can detect as few as 10 copies. It detected all 36 of 36 E. coli isolates and all 22 urine samples ( out of 89 samples tested) that had E. coli. This assay is rapid, low in cost, and simple to perform.
引用
收藏
页码:2800 / 2804
页数:5
相关论文
共 22 条
[1]   Detection of BK virus in urine by polymerase chain reaction: a comparison of DNA extraction methods [J].
Behzadbehbahani, A ;
Klapper, PE ;
Vallely, PJ ;
Cleator, GM .
JOURNAL OF VIROLOGICAL METHODS, 1997, 67 (02) :161-166
[2]   Development of a loop-mediated isothermal amplification assay for rapid detection of BK virus [J].
Bista, Bipin Raj ;
Ishwad, Chandra ;
Wadowsky, Robert M. ;
Manna, Pradip ;
Randhawa, Parmjeet Singh ;
Gupta, Gaurav ;
Adhikari, Meena ;
Tyagi, Rakhi ;
Gasper, Gina ;
Vats, Abhay .
JOURNAL OF CLINICAL MICROBIOLOGY, 2007, 45 (05) :1581-1587
[3]   Molecular epidemiology of Escherichia coli causing neonatal meningitis [J].
Bonacorsi, S ;
Bingen, E .
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, 2005, 295 (6-7) :373-381
[4]   Urinary inhibitors of polymerase chain reaction and ligase chain reaction and testing of multiple specimens may contribute to lower assay sensitivities for diagnosing Chlamydia trachomatis infected women [J].
Chernesky, MA ;
Jang, D ;
Sellors, J ;
Luinstra, K ;
Chong, S ;
Castriciano, S ;
Mahony, JB .
MOLECULAR AND CELLULAR PROBES, 1997, 11 (04) :243-249
[5]   Diarrhoeagenic Escherichia coli -: an emerging problem? [J].
Clarke, SC .
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 2001, 41 (03) :93-98
[6]   Bugs and the gut: an unstable marriage [J].
Farthing, MJG .
BEST PRACTICE & RESEARCH CLINICAL GASTROENTEROLOGY, 2004, 18 (02) :233-239
[7]   Sensitive and rapid detection of Vero toxin-producing Escherichia coli using loop-mediated isothermal amplification [J].
Hara-Kudo, Yukiko ;
Nemoto, Jiro ;
Ohtsuka, Kayoko ;
Segawa, Yuko ;
Takatori, Kosuke ;
Kojima, Tadashi ;
Ikedo, Masanari .
JOURNAL OF MEDICAL MICROBIOLOGY, 2007, 56 (03) :398-406
[8]   Microbial virulence determinants and the pathogenesis of urinary tract infection [J].
Johnson, JR .
INFECTIOUS DISEASE CLINICS OF NORTH AMERICA, 2003, 17 (02) :261-+
[9]   INHIBITORY EFFECTS OF URINE ON THE POLYMERASE CHAIN-REACTION FOR CYTOMEGALOVIRUS DNA [J].
KHAN, G ;
KANGRO, HO ;
COATES, PJ ;
HEATH, RB .
JOURNAL OF CLINICAL PATHOLOGY, 1991, 44 (05) :360-365
[10]   Diarrhea etiology in a children's hospital emergency department: A prospective cohort study [J].
Klein, Eileen J. ;
Boster, Daniel R. ;
Stapp, Jennifer R. ;
Wells, Joy G. ;
Qin, Xuan ;
Clausen, Carla R. ;
Swerdlow, David L. ;
Braden, Christopher R. ;
Tarr, Phillip I. .
CLINICAL INFECTIOUS DISEASES, 2006, 43 (07) :807-813