Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon

被引:201
作者
Petry, S [1 ]
Brodersen, DE [1 ]
Murphy, FV [1 ]
Dunham, CM [1 ]
Selmer, M [1 ]
Tarry, MJ [1 ]
Kelley, AC [1 ]
Ramakrishnan, V [1 ]
机构
[1] MRC, Mol Biol Lab, Cambridge CB2 2QH, England
基金
英国医学研究理事会;
关键词
D O I
10.1016/j.cell.2005.09.039
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
During protein synthesis, translational release factors catalyze the release of the polypeptide chain when a stop codon on the mRNA reaches the A site of the ribosome. The detailed mechanism of this process is currently unknown. We present here the crystal structures of the ribosome from Thermus thermophilus with RF1 and RF2 bound to their cognate stop codons, at resolutions of 5.9 angstrom and 6.7 angstrom, respectively. The structures reveal details of interactions of the factors with the ribosome and mRNA, including elements previously implicated in decoding and peptide release. They also shed light on conformational changes both in the factors and in the ribosome during termination. Differences seen in the interaction of RF1 and RF2 with the RF1 region of the ribosome allow us to rationalize previous biochemical data. Finally, this work demonstrates the feasibility of crystallizing ribosomes with bound factors at a defined state along the translational pathway.
引用
收藏
页码:1255 / 1266
页数:12
相关论文
共 56 条
[1]   Methods used in the structure determination of bovine mitochondrial F-1 ATPase [J].
Abrahams, JP ;
Leslie, AGW .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 :30-42
[2]   Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation [J].
Agrawal, RK ;
Linde, J ;
Sengupta, J ;
Nierhaus, KH ;
Frank, J .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 311 (04) :777-787
[3]   Mutations in RNAs of both ribosomal subunits cause defects in translation termination [J].
Arkov, AL ;
Freistroffer, DV ;
Ehrenberg, M ;
Murgola, EJ .
EMBO JOURNAL, 1998, 17 (05) :1507-1514
[4]  
Arkov AL, 1999, BIOCHEMISTRY-MOSCOW+, V64, P1354
[5]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[6]   REQUIREMENT FOR RIBOSOMAL-PROTEINS L7 AND L12 IN PEPTIDE-CHAIN TERMINATION [J].
BROT, N ;
TATE, WP ;
CASKEY, CT ;
WEISSBACH, H .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1974, 71 (01) :89-92
[7]  
Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
[9]   RIBBONS 2 0 [J].
CARSON, M .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 :958-&
[10]   HYDROLYSIS OF FMET TRANSFER RNA BY PEPTIDYL TRANSFERASE [J].
CASKEY, CT ;
BEAUDET, AL ;
SCOLNICK, EM ;
ROSMAN, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1971, 68 (12) :3163-&